Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c189' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5276438 --chroot fedora-rawhide-x86_64 --detached Version: 0.62 PID: 63096 Logging PID: 63097 Task: {'appstream': True, 'background': True, 'build_id': 5276438, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '65c6e4c9f76d28c05d682368b9aadbb43d52ba03', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging/seqan', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seqan', 'package_version': '1.4.2-51', 'project_dirname': 'python-packaging', 'project_name': 'python-packaging', 'project_owner': 'thrnciar', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-packaging/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'thrnciar/python-packaging--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '5276438-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging/seqan /var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging/seqan', '/var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan'... Running: git checkout 65c6e4c9f76d28c05d682368b9aadbb43d52ba03 cmd: ['git', 'checkout', '65c6e4c9f76d28c05d682368b9aadbb43d52ba03'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan rc: 0 stdout: stderr: Note: switching to '65c6e4c9f76d28c05d682368b9aadbb43d52ba03'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 65c6e4c automatic import of seqan Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seqan-src-1.4.2.tar.gz INFO: Calling: curl -H Pragma: -o seqan-src-1.4.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-packaging/seqan/seqan-src-1.4.2.tar.gz/md5/e7d2c6cf6474b5186c27ec31bd32738a/seqan-src-1.4.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 115M 100 115M 0 0 12.8M 0 0:00:08 0:00:08 --:--:-- 11.6M INFO: Reading stdout from command: md5sum seqan-src-1.4.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674330940.908942 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan/seqan.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674330940.908942/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 39 MB/s | 16 MB 00:00 fedora 16 MB/s | 65 MB 00:04 Last metadata expiration check: 0:00:03 ago on Sat Jan 21 19:55:49 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.14.0-2.fc38 copr_base 467 k dnf-plugins-core noarch 4.3.1-2.fc38 copr_base 34 k Installing dependencies: alternatives x86_64 1.21-1.fc38 fedora 38 k audit-libs x86_64 3.0.9-3.fc38 copr_base 117 k basesystem noarch 11-14.fc37 fedora 7.0 k bash x86_64 5.2.15-1.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils x86_64 9.1-10.fc38 fedora 1.1 M coreutils-common x86_64 9.1-10.fc38 fedora 2.0 M crypto-policies noarch 20221215-2.gita4c31a3.fc38 copr_base 64 k curl x86_64 7.87.0-3.fc38 copr_base 347 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k dnf-data noarch 4.14.0-2.fc38 copr_base 41 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k expat x86_64 2.5.0-1.fc38 fedora 110 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.15 fedora 11 k fedora-release-common noarch 38-0.15 fedora 21 k fedora-release-identity-basic noarch 38-0.15 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs x86_64 5.42-5.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k glib2 x86_64 2.74.1-3.fc38 copr_base 2.7 M glibc x86_64 2.36.9000-23.fc38 copr_base 2.1 M glibc-common x86_64 2.36.9000-23.fc38 copr_base 307 k glibc-minimal-langpack x86_64 2.36.9000-23.fc38 copr_base 34 k gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnupg2 x86_64 2.4.0-1.fc38 fedora 2.6 M gnutls x86_64 3.7.8-11.fc38 copr_base 1.1 M gpgme x86_64 1.17.1-3.fc38 fedora 210 k grep x86_64 3.8-2.fc38 fedora 292 k ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k json-c x86_64 0.16-3.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.20.1-7.fc38 copr_base 722 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-3.fc38 fedora 397 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid x86_64 2.38.1-3.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 copr_base 317 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 copr_base 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcomps x86_64 0.1.18-5.fc38 copr_base 77 k libcurl x86_64 7.87.0-3.fc38 copr_base 304 k libdnf x86_64 0.68.0-2.fc38 copr_base 653 k libevent x86_64 2.1.12-8.fc38 copr_base 258 k libffi x86_64 3.4.4-1.fc38 fedora 38 k libfsverity x86_64 1.4-8.fc37 fedora 19 k libgcc x86_64 13.0.1-0.1.fc38 fedora 93 k libgcrypt x86_64 1.10.1-6.fc38 fedora 511 k libgomp x86_64 13.0.1-0.1.fc38 fedora 300 k libgpg-error x86_64 1.46-1.fc38 fedora 227 k libidn2 x86_64 2.3.4-1.fc38 fedora 160 k libksba x86_64 1.6.3-1.fc38 fedora 158 k libmodulemd x86_64 2.14.0-5.fc38 copr_base 234 k libmount x86_64 2.38.1-3.fc38 fedora 135 k libnghttp2 x86_64 1.51.0-2.fc38 copr_base 76 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpsl x86_64 0.21.2-2.fc38 copr_base 66 k librepo x86_64 1.15.1-2.fc38 copr_base 97 k libreport-filesystem noarch 2.17.6-2.fc38 copr_base 14 k libselinux x86_64 3.5-0.rc1.1.fc38.1 fedora 86 k libsemanage x86_64 3.5-0.rc1.1.fc38 fedora 119 k libsepol x86_64 3.5-0.rc1.1.fc38 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-3.fc38 fedora 64 k libsolv x86_64 0.7.22-4.fc38 copr_base 412 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 13.0.1-0.1.fc38 fedora 844 k libtasn1 x86_64 4.19.0-1.fc38 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libuuid x86_64 2.38.1-3.fc38 fedora 27 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.33-5.fc38 fedora 120 k libxml2 x86_64 2.10.3-3.fc38 copr_base 701 k libyaml x86_64 0.2.5-8.fc37 fedora 60 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-7.fc38 fedora 131 k lz4-libs x86_64 1.9.4-1.fc38 fedora 67 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mpfr x86_64 4.1.1-2.fc38 fedora 598 k ncurses-base noarch 6.4-2.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-2.20230114.fc38 fedora 333 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-10.fc38 fedora 24 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.7-3.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-5.fc38 fedora 376 k p11-kit-trust x86_64 0.24.1-5.fc38 fedora 137 k pcre2 x86_64 10.42-1.fc38 fedora 234 k pcre2-syntax noarch 10.42-1.fc38 fedora 144 k popt x86_64 1.19-1.fc38 fedora 66 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-pip-wheel noarch 22.3.1-2.fc38 copr_base 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 x86_64 3.11.1-3.fc38 copr_base 28 k python3-dateutil noarch 1:2.8.2-5.fc38 copr_base 350 k python3-dbus x86_64 1.3.2-2.fc38 copr_base 147 k python3-distro noarch 1.8.0-2.fc38 copr_base 46 k python3-dnf noarch 4.14.0-2.fc38 copr_base 564 k python3-dnf-plugins-core noarch 4.3.1-2.fc38 copr_base 263 k python3-gpg x86_64 1.17.1-3.fc38 fedora 296 k python3-hawkey x86_64 0.68.0-2.fc38 copr_base 108 k python3-libcomps x86_64 0.1.18-5.fc38 copr_base 48 k python3-libdnf x86_64 0.68.0-2.fc38 copr_base 817 k python3-libs x86_64 3.11.1-3.fc38 copr_base 9.2 M python3-rpm x86_64 4.18.0-10.fc38 copr_base 73 k python3-six noarch 1.16.0-9.fc38 copr_base 43 k readline x86_64 8.2-2.fc38 fedora 211 k rpm x86_64 4.18.0-10.fc38 copr_base 541 k rpm-build-libs x86_64 4.18.0-10.fc38 copr_base 95 k rpm-libs x86_64 4.18.0-10.fc38 copr_base 312 k rpm-sequoia x86_64 1.2.0-1.fc38 fedora 829 k rpm-sign-libs x86_64 4.18.0-10.fc38 copr_base 27 k sed x86_64 4.8-11.fc37 fedora 306 k setup noarch 2.14.3-1.fc38 fedora 152 k shadow-utils x86_64 2:4.13-3.fc38 fedora 1.3 M sqlite-libs x86_64 3.40.1-1.fc38 fedora 661 k systemd-libs x86_64 252.4-598.fc38 fedora 632 k tpm2-tss x86_64 4.0.0-1.fc38 fedora 711 k tzdata noarch 2022g-1.fc38 fedora 716 k xz-libs x86_64 5.2.9-1.fc38 fedora 93 k zchunk-libs x86_64 1.2.3-1.fc38 fedora 51 k zlib x86_64 1.2.13-2.fc38 fedora 94 k Transaction Summary ================================================================================ Install 137 Packages Total download size: 56 M Installed size: 200 M Downloading Packages: (1/137): crypto-policies-20221215-2.gita4c31a3. 580 kB/s | 64 kB 00:00 (2/137): audit-libs-3.0.9-3.fc38.x86_64.rpm 991 kB/s | 117 kB 00:00 (3/137): dnf-4.14.0-2.fc38.noarch.rpm 11 MB/s | 467 kB 00:00 (4/137): dnf-data-4.14.0-2.fc38.noarch.rpm 1.2 MB/s | 41 kB 00:00 (5/137): curl-7.87.0-3.fc38.x86_64.rpm 2.2 MB/s | 347 kB 00:00 (6/137): dnf-plugins-core-4.3.1-2.fc38.noarch.r 1.9 MB/s | 34 kB 00:00 (7/137): file-libs-5.42-5.fc38.x86_64.rpm 22 MB/s | 676 kB 00:00 (8/137): glib2-2.74.1-3.fc38.x86_64.rpm 44 MB/s | 2.7 MB 00:00 (9/137): glibc-2.36.9000-23.fc38.x86_64.rpm 29 MB/s | 2.1 MB 00:00 (10/137): glibc-common-2.36.9000-23.fc38.x86_64 5.0 MB/s | 307 kB 00:00 (11/137): glibc-minimal-langpack-2.36.9000-23.f 1.2 MB/s | 34 kB 00:00 (12/137): gnutls-3.7.8-11.fc38.x86_64.rpm 50 MB/s | 1.1 MB 00:00 (13/137): libbrotli-1.0.9-11.fc38.x86_64.rpm 12 MB/s | 317 kB 00:00 (14/137): krb5-libs-1.20.1-7.fc38.x86_64.rpm 16 MB/s | 722 kB 00:00 (15/137): libcap-ng-0.8.3-5.fc38.x86_64.rpm 1.3 MB/s | 33 kB 00:00 (16/137): libcomps-0.1.18-5.fc38.x86_64.rpm 3.6 MB/s | 77 kB 00:00 (17/137): libcurl-7.87.0-3.fc38.x86_64.rpm 21 MB/s | 304 kB 00:00 (18/137): libdnf-0.68.0-2.fc38.x86_64.rpm 31 MB/s | 653 kB 00:00 (19/137): libevent-2.1.12-8.fc38.x86_64.rpm 13 MB/s | 258 kB 00:00 (20/137): libmodulemd-2.14.0-5.fc38.x86_64.rpm 17 MB/s | 234 kB 00:00 (21/137): libnghttp2-1.51.0-2.fc38.x86_64.rpm 6.1 MB/s | 76 kB 00:00 (22/137): libpsl-0.21.2-2.fc38.x86_64.rpm 5.3 MB/s | 66 kB 00:00 (23/137): librepo-1.15.1-2.fc38.x86_64.rpm 8.4 MB/s | 97 kB 00:00 (24/137): libreport-filesystem-2.17.6-2.fc38.no 1.3 MB/s | 14 kB 00:00 (25/137): libsolv-0.7.22-4.fc38.x86_64.rpm 27 MB/s | 412 kB 00:00 (26/137): libxml2-2.10.3-3.fc38.x86_64.rpm 35 MB/s | 701 kB 00:00 (27/137): python-pip-wheel-22.3.1-2.fc38.noarch 33 MB/s | 1.4 MB 00:00 (28/137): python3-3.11.1-3.fc38.x86_64.rpm 754 kB/s | 28 kB 00:00 (29/137): python3-dateutil-2.8.2-5.fc38.noarch. 12 MB/s | 350 kB 00:00 (30/137): python3-distro-1.8.0-2.fc38.noarch.rp 3.8 MB/s | 46 kB 00:00 (31/137): python3-dbus-1.3.2-2.fc38.x86_64.rpm 11 MB/s | 147 kB 00:00 (32/137): python3-dnf-4.14.0-2.fc38.noarch.rpm 29 MB/s | 564 kB 00:00 (33/137): python3-hawkey-0.68.0-2.fc38.x86_64.r 5.7 MB/s | 108 kB 00:00 (34/137): python3-dnf-plugins-core-4.3.1-2.fc38 12 MB/s | 263 kB 00:00 (35/137): python3-libcomps-0.1.18-5.fc38.x86_64 2.7 MB/s | 48 kB 00:00 (36/137): python3-libdnf-0.68.0-2.fc38.x86_64.r 26 MB/s | 817 kB 00:00 (37/137): python3-rpm-4.18.0-10.fc38.x86_64.rpm 2.5 MB/s | 73 kB 00:00 (38/137): python3-six-1.16.0-9.fc38.noarch.rpm 462 kB/s | 43 kB 00:00 (39/137): python3-libs-3.11.1-3.fc38.x86_64.rpm 67 MB/s | 9.2 MB 00:00 (40/137): rpm-4.18.0-10.fc38.x86_64.rpm 4.9 MB/s | 541 kB 00:00 (41/137): rpm-build-libs-4.18.0-10.fc38.x86_64. 6.3 MB/s | 95 kB 00:00 (42/137): rpm-sign-libs-4.18.0-10.fc38.x86_64.r 1.9 MB/s | 27 kB 00:00 (43/137): rpm-libs-4.18.0-10.fc38.x86_64.rpm 18 MB/s | 312 kB 00:00 (44/137): basesystem-11-14.fc37.noarch.rpm 86 kB/s | 7.0 kB 00:00 (45/137): alternatives-1.21-1.fc38.x86_64.rpm 268 kB/s | 38 kB 00:00 (46/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 428 kB/s | 41 kB 00:00 (47/137): ca-certificates-2022.2.54-5.fc37.noar 3.5 MB/s | 829 kB 00:00 (48/137): bash-5.2.15-1.fc38.x86_64.rpm 4.8 MB/s | 1.8 MB 00:00 (49/137): coreutils-9.1-10.fc38.x86_64.rpm 4.5 MB/s | 1.1 MB 00:00 (50/137): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 14 MB/s | 792 kB 00:00 (51/137): dbus-libs-1.14.4-1.fc38.x86_64.rpm 3.2 MB/s | 156 kB 00:00 (52/137): elfutils-default-yama-scope-0.188-3.f 342 kB/s | 15 kB 00:00 (53/137): coreutils-common-9.1-10.fc38.x86_64.r 16 MB/s | 2.0 MB 00:00 (54/137): elfutils-libelf-0.188-3.fc38.x86_64.r 4.0 MB/s | 196 kB 00:00 (55/137): elfutils-libs-0.188-3.fc38.x86_64.rpm 5.3 MB/s | 257 kB 00:00 (56/137): expat-2.5.0-1.fc38.x86_64.rpm 2.4 MB/s | 110 kB 00:00 (57/137): fedora-gpg-keys-38-0.3.noarch.rpm 2.6 MB/s | 125 kB 00:00 (58/137): fedora-release-38-0.15.noarch.rpm 257 kB/s | 11 kB 00:00 (59/137): fedora-release-common-38-0.15.noarch. 472 kB/s | 21 kB 00:00 (60/137): fedora-release-identity-basic-38-0.15 273 kB/s | 12 kB 00:00 (61/137): fedora-repos-38-0.3.noarch.rpm 229 kB/s | 10 kB 00:00 (62/137): fedora-repos-rawhide-38-0.3.noarch.rp 218 kB/s | 9.7 kB 00:00 (63/137): findutils-4.9.0-2.fc37.x86_64.rpm 8.5 MB/s | 492 kB 00:00 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zlib-1.2.13-2.fc38.x86_64.rpm 1.5 MB/s | 94 kB 00:00 -------------------------------------------------------------------------------- Total 21 MB/s | 56 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.1.fc38.x86_64 1/137 Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64 1/137 Installing : tzdata-2022g-1.fc38.noarch 2/137 Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137 Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137 Installing : fedora-release-identity-basic-38-0.15.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137 Installing : pcre2-syntax-10.42-1.fc38.noarch 7/137 Installing : ncurses-base-6.4-2.20230114.fc38.noarch 8/137 Installing : libssh-config-0.10.4-2.fc38.noarch 9/137 Installing : fedora-gpg-keys-38-0.3.noarch 10/137 Installing : fedora-release-38-0.15.noarch 11/137 Installing : fedora-release-common-38-0.15.noarch 12/137 Installing : fedora-repos-rawhide-38-0.3.noarch 13/137 Installing : fedora-repos-38-0.3.noarch 14/137 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Installing : python3-libdnf-0.68.0-2.fc38.x86_64 122/137 Installing : python3-hawkey-0.68.0-2.fc38.x86_64 123/137 Installing : python3-gpg-1.17.1-3.fc38.x86_64 124/137 Installing : curl-7.87.0-3.fc38.x86_64 125/137 Running scriptlet: tpm2-tss-4.0.0-1.fc38.x86_64 126/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-1.fc38.x86_64 126/137 Installing : ima-evm-utils-1.4-6.fc37.x86_64 127/137 Installing : rpm-sign-libs-4.18.0-10.fc38.x86_64 128/137 Installing : python3-rpm-4.18.0-10.fc38.x86_64 129/137 Installing : libarchive-3.6.1-3.fc38.x86_64 130/137 Installing : libreport-filesystem-2.17.6-2.fc38.noarch 131/137 Installing : dnf-data-4.14.0-2.fc38.noarch 132/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : python3-dnf-4.14.0-2.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-2.fc38.noarch 135/137 Installing : dnf-4.14.0-2.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-2.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 137/137 Installing : rpm-4.18.0-10.fc38.x86_64 137/137 Running scriptlet: filesystem-3.18-2.fc37.x86_64 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 137/137 Verifying : audit-libs-3.0.9-3.fc38.x86_64 1/137 Verifying : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/137 Verifying : curl-7.87.0-3.fc38.x86_64 3/137 Verifying : dnf-4.14.0-2.fc38.noarch 4/137 Verifying : dnf-data-4.14.0-2.fc38.noarch 5/137 Verifying : dnf-plugins-core-4.3.1-2.fc38.noarch 6/137 Verifying : file-libs-5.42-5.fc38.x86_64 7/137 Verifying : glib2-2.74.1-3.fc38.x86_64 8/137 Verifying : glibc-2.36.9000-23.fc38.x86_64 9/137 Verifying : glibc-common-2.36.9000-23.fc38.x86_64 10/137 Verifying : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 11/137 Verifying : gnutls-3.7.8-11.fc38.x86_64 12/137 Verifying : krb5-libs-1.20.1-7.fc38.x86_64 13/137 Verifying : libbrotli-1.0.9-11.fc38.x86_64 14/137 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 15/137 Verifying : libcomps-0.1.18-5.fc38.x86_64 16/137 Verifying : libcurl-7.87.0-3.fc38.x86_64 17/137 Verifying : libdnf-0.68.0-2.fc38.x86_64 18/137 Verifying : libevent-2.1.12-8.fc38.x86_64 19/137 Verifying : libmodulemd-2.14.0-5.fc38.x86_64 20/137 Verifying : libnghttp2-1.51.0-2.fc38.x86_64 21/137 Verifying : libpsl-0.21.2-2.fc38.x86_64 22/137 Verifying : librepo-1.15.1-2.fc38.x86_64 23/137 Verifying : libreport-filesystem-2.17.6-2.fc38.noarch 24/137 Verifying : libsolv-0.7.22-4.fc38.x86_64 25/137 Verifying : libxml2-2.10.3-3.fc38.x86_64 26/137 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 27/137 Verifying : python3-3.11.1-3.fc38.x86_64 28/137 Verifying : python3-dateutil-1:2.8.2-5.fc38.noarch 29/137 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 30/137 Verifying : python3-distro-1.8.0-2.fc38.noarch 31/137 Verifying : python3-dnf-4.14.0-2.fc38.noarch 32/137 Verifying : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 33/137 Verifying : python3-hawkey-0.68.0-2.fc38.x86_64 34/137 Verifying : python3-libcomps-0.1.18-5.fc38.x86_64 35/137 Verifying : python3-libdnf-0.68.0-2.fc38.x86_64 36/137 Verifying : python3-libs-3.11.1-3.fc38.x86_64 37/137 Verifying : python3-rpm-4.18.0-10.fc38.x86_64 38/137 Verifying : python3-six-1.16.0-9.fc38.noarch 39/137 Verifying : rpm-4.18.0-10.fc38.x86_64 40/137 Verifying : rpm-build-libs-4.18.0-10.fc38.x86_64 41/137 Verifying : rpm-libs-4.18.0-10.fc38.x86_64 42/137 Verifying : rpm-sign-libs-4.18.0-10.fc38.x86_64 43/137 Verifying : alternatives-1.21-1.fc38.x86_64 44/137 Verifying : basesystem-11-14.fc37.noarch 45/137 Verifying : bash-5.2.15-1.fc38.x86_64 46/137 Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 47/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 48/137 Verifying : coreutils-9.1-10.fc38.x86_64 49/137 Verifying : coreutils-common-9.1-10.fc38.x86_64 50/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 51/137 Verifying : dbus-libs-1:1.14.4-1.fc38.x86_64 52/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 53/137 Verifying : elfutils-libelf-0.188-3.fc38.x86_64 54/137 Verifying : elfutils-libs-0.188-3.fc38.x86_64 55/137 Verifying : expat-2.5.0-1.fc38.x86_64 56/137 Verifying : fedora-gpg-keys-38-0.3.noarch 57/137 Verifying : fedora-release-38-0.15.noarch 58/137 Verifying : fedora-release-common-38-0.15.noarch 59/137 Verifying : fedora-release-identity-basic-38-0.15.noarch 60/137 Verifying : fedora-repos-38-0.3.noarch 61/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 62/137 Verifying : filesystem-3.18-2.fc37.x86_64 63/137 Verifying : findutils-1:4.9.0-2.fc37.x86_64 64/137 Verifying : gawk-5.1.1-4.fc37.x86_64 65/137 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 66/137 Verifying : gmp-1:6.2.1-3.fc37.x86_64 67/137 Verifying : gnupg2-2.4.0-1.fc38.x86_64 68/137 Verifying : gpgme-1.17.1-3.fc38.x86_64 69/137 Verifying : grep-3.8-2.fc38.x86_64 70/137 Verifying : ima-evm-utils-1.4-6.fc37.x86_64 71/137 Verifying : json-c-0.16-3.fc38.x86_64 72/137 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 73/137 Verifying : libacl-2.3.1-4.fc37.x86_64 74/137 Verifying : libarchive-3.6.1-3.fc38.x86_64 75/137 Verifying : libassuan-2.5.5-5.fc37.x86_64 76/137 Verifying : libattr-2.5.1-5.fc37.x86_64 77/137 Verifying : libb2-0.98.1-7.fc37.x86_64 78/137 Verifying : libblkid-2.38.1-3.fc38.x86_64 79/137 Verifying : libcap-2.48-5.fc37.x86_64 80/137 Verifying : libcom_err-1.46.5-3.fc37.x86_64 81/137 Verifying : libffi-3.4.4-1.fc38.x86_64 82/137 Verifying : libfsverity-1.4-8.fc37.x86_64 83/137 Verifying : libgcc-13.0.1-0.1.fc38.x86_64 84/137 Verifying : libgcrypt-1.10.1-6.fc38.x86_64 85/137 Verifying : libgomp-13.0.1-0.1.fc38.x86_64 86/137 Verifying : libgpg-error-1.46-1.fc38.x86_64 87/137 Verifying : libidn2-2.3.4-1.fc38.x86_64 88/137 Verifying : libksba-1.6.3-1.fc38.x86_64 89/137 Verifying : libmount-2.38.1-3.fc38.x86_64 90/137 Verifying : libnsl2-2.0.0-4.fc37.x86_64 91/137 Verifying : libselinux-3.5-0.rc1.1.fc38.1.x86_64 92/137 Verifying : libsemanage-3.5-0.rc1.1.fc38.x86_64 93/137 Verifying : libsepol-3.5-0.rc1.1.fc38.x86_64 94/137 Verifying : libsigsegv-2.14-3.fc37.x86_64 95/137 Verifying : libsmartcols-2.38.1-3.fc38.x86_64 96/137 Verifying : libssh-0.10.4-2.fc38.x86_64 97/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 98/137 Verifying : libstdc++-13.0.1-0.1.fc38.x86_64 99/137 Verifying : libtasn1-4.19.0-1.fc38.x86_64 100/137 Verifying : libtirpc-1.3.3-0.fc37.x86_64 101/137 Verifying : libunistring-1.0-2.fc37.x86_64 102/137 Verifying : libuuid-2.38.1-3.fc38.x86_64 103/137 Verifying : libverto-0.3.2-4.fc37.x86_64 104/137 Verifying : libxcrypt-4.4.33-5.fc38.x86_64 105/137 Verifying : libyaml-0.2.5-8.fc37.x86_64 106/137 Verifying : libzstd-1.5.2-3.fc37.x86_64 107/137 Verifying : lua-libs-5.4.4-7.fc38.x86_64 108/137 Verifying : lz4-libs-1.9.4-1.fc38.x86_64 109/137 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 110/137 Verifying : mpfr-4.1.1-2.fc38.x86_64 111/137 Verifying : ncurses-base-6.4-2.20230114.fc38.noarch 112/137 Verifying : ncurses-libs-6.4-2.20230114.fc38.x86_64 113/137 Verifying : nettle-3.8-2.fc37.x86_64 114/137 Verifying : npth-1.6-10.fc38.x86_64 115/137 Verifying : openldap-2.6.3-1.fc38.x86_64 116/137 Verifying : openssl-libs-1:3.0.7-3.fc38.x86_64 117/137 Verifying : p11-kit-0.24.1-5.fc38.x86_64 118/137 Verifying : p11-kit-trust-0.24.1-5.fc38.x86_64 119/137 Verifying : pcre2-10.42-1.fc38.x86_64 120/137 Verifying : pcre2-syntax-10.42-1.fc38.noarch 121/137 Verifying : popt-1.19-1.fc38.x86_64 122/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 123/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 124/137 Verifying : python3-gpg-1.17.1-3.fc38.x86_64 125/137 Verifying : readline-8.2-2.fc38.x86_64 126/137 Verifying : rpm-sequoia-1.2.0-1.fc38.x86_64 127/137 Verifying : sed-4.8-11.fc37.x86_64 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.x86_64 130/137 Verifying : sqlite-libs-3.40.1-1.fc38.x86_64 131/137 Verifying : systemd-libs-252.4-598.fc38.x86_64 132/137 Verifying : tpm2-tss-4.0.0-1.fc38.x86_64 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.x86_64 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.x86_64 136/137 Verifying : zlib-1.2.13-2.fc38.x86_64 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.x86_64 audit-libs-3.0.9-3.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.2.15-1.fc38.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-10.fc38.x86_64 coreutils-common-9.1-10.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch curl-7.87.0-3.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 dbus-libs-1:1.14.4-1.fc38.x86_64 dnf-4.14.0-2.fc38.noarch dnf-data-4.14.0-2.fc38.noarch dnf-plugins-core-4.3.1-2.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 expat-2.5.0-1.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.15.noarch fedora-release-common-38-0.15.noarch fedora-release-identity-basic-38-0.15.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-5.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 glib2-2.74.1-3.fc38.x86_64 glibc-2.36.9000-23.fc38.x86_64 glibc-common-2.36.9000-23.fc38.x86_64 glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnupg2-2.4.0-1.fc38.x86_64 gnutls-3.7.8-11.fc38.x86_64 gpgme-1.17.1-3.fc38.x86_64 grep-3.8-2.fc38.x86_64 ima-evm-utils-1.4-6.fc37.x86_64 json-c-0.16-3.fc38.x86_64 keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.20.1-7.fc38.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-3.fc38.x86_64 libassuan-2.5.5-5.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libb2-0.98.1-7.fc37.x86_64 libblkid-2.38.1-3.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcomps-0.1.18-5.fc38.x86_64 libcurl-7.87.0-3.fc38.x86_64 libdnf-0.68.0-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-1.fc38.x86_64 libfsverity-1.4-8.fc37.x86_64 libgcc-13.0.1-0.1.fc38.x86_64 libgcrypt-1.10.1-6.fc38.x86_64 libgomp-13.0.1-0.1.fc38.x86_64 libgpg-error-1.46-1.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libksba-1.6.3-1.fc38.x86_64 libmodulemd-2.14.0-5.fc38.x86_64 libmount-2.38.1-3.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpsl-0.21.2-2.fc38.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.6-2.fc38.noarch libselinux-3.5-0.rc1.1.fc38.1.x86_64 libsemanage-3.5-0.rc1.1.fc38.x86_64 libsepol-3.5-0.rc1.1.fc38.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-3.fc38.x86_64 libsolv-0.7.22-4.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.1-0.1.fc38.x86_64 libtasn1-4.19.0-1.fc38.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libuuid-2.38.1-3.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.33-5.fc38.x86_64 libxml2-2.10.3-3.fc38.x86_64 libyaml-0.2.5-8.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-7.fc38.x86_64 lz4-libs-1.9.4-1.fc38.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mpfr-4.1.1-2.fc38.x86_64 ncurses-base-6.4-2.20230114.fc38.noarch ncurses-libs-6.4-2.20230114.fc38.x86_64 nettle-3.8-2.fc37.x86_64 npth-1.6-10.fc38.x86_64 openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.7-3.fc38.x86_64 p11-kit-0.24.1-5.fc38.x86_64 p11-kit-trust-0.24.1-5.fc38.x86_64 pcre2-10.42-1.fc38.x86_64 pcre2-syntax-10.42-1.fc38.noarch popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-3.fc38.x86_64 python3-dateutil-1:2.8.2-5.fc38.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-2.fc38.noarch python3-dnf-4.14.0-2.fc38.noarch python3-dnf-plugins-core-4.3.1-2.fc38.noarch python3-gpg-1.17.1-3.fc38.x86_64 python3-hawkey-0.68.0-2.fc38.x86_64 python3-libcomps-0.1.18-5.fc38.x86_64 python3-libdnf-0.68.0-2.fc38.x86_64 python3-libs-3.11.1-3.fc38.x86_64 python3-rpm-4.18.0-10.fc38.x86_64 python3-six-1.16.0-9.fc38.noarch readline-8.2-2.fc38.x86_64 rpm-4.18.0-10.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 rpm-sequoia-1.2.0-1.fc38.x86_64 rpm-sign-libs-4.18.0-10.fc38.x86_64 sed-4.8-11.fc37.x86_64 setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.x86_64 sqlite-libs-3.40.1-1.fc38.x86_64 systemd-libs-252.4-598.fc38.x86_64 tpm2-tss-4.0.0-1.fc38.x86_64 tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.x86_64 zchunk-libs-1.2.3-1.fc38.x86_64 zlib-1.2.13-2.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 14 kB/s | 3.7 kB 00:00 Copr repository 22 MB/s | 16 MB 00:00 fedora 276 kB/s | 21 kB 00:00 Last metadata expiration check: 0:00:01 ago on Sat Jan 21 19:56:24 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-1.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-12.fc37 fedora 52 k coreutils x86_64 9.1-10.fc38 fedora 1.1 M cpio x86_64 2.13-13.fc38 fedora 276 k diffutils x86_64 3.9-1.fc38 fedora 397 k fedora-release-common noarch 38-0.15 fedora 21 k findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36.9000-23.fc38 copr_base 34 k grep x86_64 3.8-2.fc38 fedora 292 k gzip x86_64 1.12-2.fc37 fedora 166 k info x86_64 7.0.1-1.fc38 fedora 181 k patch x86_64 2.7.6-17.fc37 fedora 124 k redhat-rpm-config noarch 245-1.fc38 fedora 82 k rpm-build x86_64 4.18.0-10.fc38 copr_base 70 k sed x86_64 4.8-11.fc37 fedora 306 k shadow-utils x86_64 2:4.13-3.fc38 fedora 1.3 M tar x86_64 2:1.34-5.fc38 fedora 885 k unzip x86_64 6.0-58.fc38 fedora 182 k util-linux x86_64 2.38.1-3.fc38 fedora 2.3 M which x86_64 2.21-36.fc38 fedora 41 k xz x86_64 5.2.9-1.fc38 fedora 306 k Installing dependencies: alternatives x86_64 1.21-1.fc38 fedora 38 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs x86_64 3.0.9-3.fc38 copr_base 117 k authselect x86_64 1.4.2-1.fc38 fedora 144 k authselect-libs x86_64 1.4.2-1.fc38 fedora 250 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.39-6.fc38 fedora 5.5 M binutils-gold x86_64 2.39-6.fc38 fedora 777 k bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common x86_64 9.1-10.fc38 fedora 2.0 M cracklib x86_64 2.9.7-30.fc38 fedora 92 k crypto-policies noarch 20221215-2.gita4c31a3.fc38 copr_base 64 k curl x86_64 7.87.0-3.fc38 copr_base 347 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k debugedit x86_64 5.0-5.fc37 fedora 77 k dwz x86_64 0.15-1.fc38 fedora 136 k ed x86_64 1.19-1.fc38 fedora 78 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.188-3.fc38 fedora 529 k elfutils-debuginfod-client x86_64 0.188-3.fc38 fedora 40 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.15 fedora 11 k fedora-release-identity-basic noarch 38-0.15 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file x86_64 5.42-5.fc38 copr_base 49 k file-libs x86_64 5.42-5.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 12.1-10.fc38 fedora 3.7 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc x86_64 2.36.9000-23.fc38 copr_base 2.1 M glibc-common x86_64 2.36.9000-23.fc38 copr_base 307 k glibc-gconv-extra x86_64 2.36.9000-23.fc38 copr_base 1.5 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 5-1.fc38 fedora 8.4 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson x86_64 2.13.1-6.fc38 copr_base 45 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.20.1-7.fc38 copr_base 722 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-3.fc38 fedora 397 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libblkid x86_64 2.38.1-3.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 copr_base 317 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 copr_base 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.87.0-3.fc38 copr_base 304 k libdb x86_64 5.3.28-54.fc38 fedora 764 k libeconf x86_64 0.4.0-4.fc37 fedora 27 k libevent x86_64 2.1.12-8.fc38 copr_base 258 k libfdisk x86_64 2.38.1-3.fc38 fedora 160 k libffi x86_64 3.4.4-1.fc38 fedora 38 k libgcc x86_64 13.0.1-0.1.fc38 fedora 93 k libgomp x86_64 13.0.1-0.1.fc38 fedora 300 k libidn2 x86_64 2.3.4-1.fc38 fedora 160 k libmount x86_64 2.38.1-3.fc38 fedora 135 k libnghttp2 x86_64 1.51.0-2.fc38 copr_base 76 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k libpsl x86_64 0.21.2-2.fc38 copr_base 66 k libpwquality x86_64 1.4.5-2.fc38 copr_base 108 k libselinux x86_64 3.5-0.rc1.1.fc38.1 fedora 86 k libsemanage x86_64 3.5-0.rc1.1.fc38 fedora 119 k libsepol x86_64 3.5-0.rc1.1.fc38 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-3.fc38 fedora 64 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 13.0.1-0.1.fc38 fedora 844 k libtasn1 x86_64 4.19.0-1.fc38 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libutempter x86_64 1.2.1-7.fc37 fedora 26 k libuuid x86_64 2.38.1-3.fc38 fedora 27 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.33-5.fc38 fedora 120 k libxml2 x86_64 2.10.3-3.fc38 copr_base 701 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-7.fc38 fedora 131 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.4-1.fc38 fedora 67 k mpfr x86_64 4.1.1-2.fc38 fedora 598 k ncurses-base noarch 6.4-2.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-2.20230114.fc38 fedora 333 k nettle x86_64 3.8-2.fc37 fedora 414 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.7-3.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-5.fc38 fedora 376 k p11-kit-trust x86_64 0.24.1-5.fc38 fedora 137 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam x86_64 1.5.2-15.fc38 fedora 559 k pam-libs x86_64 1.5.2-15.fc38 fedora 57 k pcre2 x86_64 10.42-1.fc38 fedora 234 k pcre2-syntax noarch 10.42-1.fc38 fedora 144 k perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k pkgconf x86_64 1.8.0-3.fc37 fedora 41 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k popt x86_64 1.19-1.fc38 fedora 66 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-srpm-macros noarch 3.11-7.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.8-1.fc38 fedora 8.0 k readline x86_64 8.2-2.fc38 fedora 211 k rpm x86_64 4.18.0-10.fc38 copr_base 541 k rpm-build-libs x86_64 4.18.0-10.fc38 copr_base 95 k rpm-libs x86_64 4.18.0-10.fc38 copr_base 312 k rpm-sequoia x86_64 1.2.0-1.fc38 fedora 829 k rpmautospec-rpm-macros noarch 0.3.1-2.fc38 copr_base 9.5 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.3-1.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-1.fc38 fedora 661 k systemd-libs x86_64 252.4-598.fc38 fedora 632 k tzdata noarch 2022g-1.fc38 fedora 716 k util-linux-core x86_64 2.38.1-3.fc38 fedora 470 k xxhash-libs x86_64 0.8.1-3.fc37 fedora 41 k xz-libs x86_64 5.2.9-1.fc38 fedora 93 k zip x86_64 3.0-35.fc38 fedora 259 k zlib x86_64 1.2.13-2.fc38 fedora 94 k zstd x86_64 1.5.2-3.fc37 fedora 447 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total size: 52 M Installed size: 181 M Downloading Packages: [SKIPPED] audit-libs-3.0.9-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20221215-2.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.87.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-5.42-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.87.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.51.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] alternatives-1.21-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] authselect-1.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.15.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.15.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.15.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-5-1.fc38.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] grep-3.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-54.fc38.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgcc-13.0.1-0.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgomp-13.0.1-0.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-0.rc1.1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-0.rc1.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-0.rc1.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.0.1-0.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc37.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-2.20230114.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-2.20230114.fc38.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.7-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-15.fc38.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-15.fc38.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc37.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-7.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.8-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-245-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.2.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-252.4-598.fc38.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-35.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.1.fc38.x86_64 1/153 Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64 1/153 Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153 Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153 Installing : tzdata-2022g-1.fc38.noarch 3/153 Installing : fedora-release-identity-basic-38-0.15.noarch 4/153 Installing : rust-srpm-macros-23-1.fc38.noarch 5/153 Installing : qt5-srpm-macros-5.15.8-1.fc38.noarch 6/153 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 7/153 Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/153 Installing : perl-srpm-macros-1-47.fc38.noarch 9/153 Installing : pcre2-syntax-10.42-1.fc38.noarch 10/153 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 11/153 Installing : openblas-srpm-macros-2-12.fc37.noarch 12/153 Installing : ocaml-srpm-macros-7-2.fc37.noarch 13/153 Installing : nim-srpm-macros-3-7.fc37.noarch 14/153 Installing : ncurses-base-6.4-2.20230114.fc38.noarch 15/153 Installing : libssh-config-0.10.4-2.fc38.noarch 16/153 Installing : kernel-srpm-macros-1.0-15.fc37.noarch 17/153 Installing : gnat-srpm-macros-5-1.fc38.noarch 18/153 Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 19/153 Installing : fpc-srpm-macros-1.3-6.fc37.noarch 20/153 Installing : fedora-gpg-keys-38-0.3.noarch 21/153 Installing : fedora-release-38-0.15.noarch 22/153 Installing : fedora-release-common-38-0.15.noarch 23/153 Installing : fedora-repos-rawhide-38-0.3.noarch 24/153 Installing : fedora-repos-38-0.3.noarch 25/153 Installing : setup-2.14.3-1.fc38.noarch 26/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-1.fc38.noarch 26/153 Installing : filesystem-3.18-2.fc37.x86_64 27/153 Installing : basesystem-11-14.fc37.noarch 28/153 Installing : glibc-gconv-extra-2.36.9000-23.fc38.x86_64 29/153 Running scriptlet: glibc-gconv-extra-2.36.9000-23.fc38.x86_64 29/153 Installing : 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libattr-2.5.1-5.fc37.x86_64 46/153 Installing : libacl-2.3.1-4.fc37.x86_64 47/153 Installing : libcap-2.48-5.fc37.x86_64 48/153 Installing : libxcrypt-4.4.33-5.fc38.x86_64 49/153 Installing : lz4-libs-1.9.4-1.fc38.x86_64 50/153 Installing : systemd-libs-252.4-598.fc38.x86_64 51/153 Installing : mpfr-4.1.1-2.fc38.x86_64 52/153 Installing : dwz-0.15-1.fc38.x86_64 53/153 Installing : unzip-6.0-58.fc38.x86_64 54/153 Installing : file-libs-5.42-5.fc38.x86_64 55/153 Installing : file-5.42-5.fc38.x86_64 56/153 Installing : sqlite-libs-3.40.1-1.fc38.x86_64 57/153 Installing : libcap-ng-0.8.3-5.fc38.x86_64 58/153 Installing : audit-libs-3.0.9-3.fc38.x86_64 59/153 Installing : alternatives-1.21-1.fc38.x86_64 60/153 Installing : libcom_err-1.46.5-3.fc37.x86_64 61/153 Installing : libeconf-0.4.0-4.fc37.x86_64 62/153 Installing : pam-libs-1.5.2-15.fc38.x86_64 63/153 Installing : libsepol-3.5-0.rc1.1.fc38.x86_64 64/153 Installing : libsmartcols-2.38.1-3.fc38.x86_64 65/153 Installing : libunistring-1.0-2.fc37.x86_64 66/153 Installing : libidn2-2.3.4-1.fc38.x86_64 67/153 Installing : lua-libs-5.4.4-7.fc38.x86_64 68/153 Installing : pcre2-10.42-1.fc38.x86_64 69/153 Installing : libselinux-3.5-0.rc1.1.fc38.1.x86_64 70/153 Installing : sed-4.8-11.fc37.x86_64 71/153 Installing : grep-3.8-2.fc38.x86_64 72/153 Installing : findutils-1:4.9.0-2.fc37.x86_64 73/153 Installing : xz-5.2.9-1.fc38.x86_64 74/153 Installing : libmount-2.38.1-3.fc38.x86_64 75/153 Installing : util-linux-core-2.38.1-3.fc38.x86_64 76/153 Installing : libsemanage-3.5-0.rc1.1.fc38.x86_64 77/153 Installing : shadow-utils-2:4.13-3.fc38.x86_64 78/153 Running scriptlet: libutempter-1.2.1-7.fc37.x86_64 79/153 Installing : libutempter-1.2.1-7.fc37.x86_64 79/153 Installing : tar-2:1.34-5.fc38.x86_64 80/153 Installing : libpsl-0.21.2-2.fc38.x86_64 81/153 Installing : zip-3.0-35.fc38.x86_64 82/153 Installing : zstd-1.5.2-3.fc37.x86_64 83/153 Installing : libfdisk-2.38.1-3.fc38.x86_64 84/153 Installing : nettle-3.8-2.fc37.x86_64 85/153 Installing : rpm-sequoia-1.2.0-1.fc38.x86_64 86/153 Installing : rpm-libs-4.18.0-10.fc38.x86_64 87/153 Installing : bzip2-1.0.8-12.fc37.x86_64 88/153 Installing : libxml2-2.10.3-3.fc38.x86_64 89/153 Installing : ed-1.19-1.fc38.x86_64 90/153 Installing : patch-2.7.6-17.fc37.x86_64 91/153 Installing : elfutils-default-yama-scope-0.188-3.fc38.noarch 92/153 Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch 92/153 Installing : jansson-2.13.1-6.fc38.x86_64 93/153 Installing : libbrotli-1.0.9-11.fc38.x86_64 94/153 Installing : libnghttp2-1.51.0-2.fc38.x86_64 95/153 Installing : cpio-2.13-13.fc38.x86_64 96/153 Installing : diffutils-3.9-1.fc38.x86_64 97/153 Installing : gdbm-libs-1:1.23-2.fc37.x86_64 98/153 Installing : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 99/153 Installing : keyutils-libs-1.6.1-5.fc37.x86_64 100/153 Installing : libdb-5.3.28-54.fc38.x86_64 101/153 Installing : libffi-3.4.4-1.fc38.x86_64 102/153 Installing : p11-kit-0.24.1-5.fc38.x86_64 103/153 Installing : libgomp-13.0.1-0.1.fc38.x86_64 104/153 Installing : libpkgconf-1.8.0-3.fc37.x86_64 105/153 Installing : pkgconf-1.8.0-3.fc37.x86_64 106/153 Installing : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 107/153 Installing : libsigsegv-2.14-3.fc37.x86_64 108/153 Installing : gawk-5.1.1-4.fc37.x86_64 109/153 Installing : libtasn1-4.19.0-1.fc38.x86_64 110/153 Installing : p11-kit-trust-0.24.1-5.fc38.x86_64 111/153 Running scriptlet: p11-kit-trust-0.24.1-5.fc38.x86_64 111/153 Installing : libverto-0.3.2-4.fc37.x86_64 112/153 Installing : xxhash-libs-0.8.1-3.fc37.x86_64 113/153 Installing : coreutils-common-9.1-10.fc38.x86_64 114/153 Installing : openssl-libs-1:3.0.7-3.fc38.x86_64 115/153 Installing : coreutils-9.1-10.fc38.x86_64 116/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 117/153 Installing : ca-certificates-2022.2.54-5.fc37.noarch 117/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 117/153 Installing : krb5-libs-1.20.1-7.fc38.x86_64 118/153 Installing : libtirpc-1.3.3-0.fc37.x86_64 119/153 Running scriptlet: authselect-libs-1.4.2-1.fc38.x86_64 120/153 Installing : authselect-libs-1.4.2-1.fc38.x86_64 120/153 Installing : gzip-1.12-2.fc37.x86_64 121/153 Installing : cracklib-2.9.7-30.fc38.x86_64 122/153 Installing : libpwquality-1.4.5-2.fc38.x86_64 123/153 Installing : authselect-1.4.2-1.fc38.x86_64 124/153 Installing : libnsl2-2.0.0-4.fc37.x86_64 125/153 Installing : pam-1.5.2-15.fc38.x86_64 126/153 Installing : libssh-0.10.4-2.fc38.x86_64 127/153 Installing : libevent-2.1.12-8.fc38.x86_64 128/153 Installing : openldap-2.6.3-1.fc38.x86_64 129/153 Installing : libcurl-7.87.0-3.fc38.x86_64 130/153 Installing : elfutils-libs-0.188-3.fc38.x86_64 131/153 Installing : elfutils-debuginfod-client-0.188-3.fc38.x86_64 132/153 Installing : binutils-gold-2.39-6.fc38.x86_64 133/153 Installing : binutils-2.39-6.fc38.x86_64 134/153 Running scriptlet: binutils-2.39-6.fc38.x86_64 134/153 Installing : elfutils-0.188-3.fc38.x86_64 135/153 Installing : gdb-minimal-12.1-10.fc38.x86_64 136/153 Installing : debugedit-5.0-5.fc37.x86_64 137/153 Installing : rpm-build-libs-4.18.0-10.fc38.x86_64 138/153 Installing : curl-7.87.0-3.fc38.x86_64 139/153 Installing : libarchive-3.6.1-3.fc38.x86_64 140/153 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 141/153 Installing : rpm-4.18.0-10.fc38.x86_64 141/153 Installing : rpmautospec-rpm-macros-0.3.1-2.fc38.noarch 142/153 Installing : efi-srpm-macros-5-6.fc37.noarch 143/153 Installing : lua-srpm-macros-1-7.fc37.noarch 144/153 Installing : ansible-srpm-macros-1-8.1.fc38.noarch 145/153 Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 146/153 Installing : go-srpm-macros-3.2.0-1.fc38.noarch 147/153 Installing : python-srpm-macros-3.11-7.fc38.noarch 148/153 Installing : redhat-rpm-config-245-1.fc38.noarch 149/153 Installing : rpm-build-4.18.0-10.fc38.x86_64 150/153 Installing : util-linux-2.38.1-3.fc38.x86_64 151/153 Installing : which-2.21-36.fc38.x86_64 152/153 Installing : info-7.0.1-1.fc38.x86_64 153/153 Running scriptlet: filesystem-3.18-2.fc37.x86_64 153/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-1.fc38.x86_64 153/153 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 153/153 Running scriptlet: info-7.0.1-1.fc38.x86_64 153/153 Verifying : audit-libs-3.0.9-3.fc38.x86_64 1/153 Verifying : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153 Verifying : curl-7.87.0-3.fc38.x86_64 3/153 Verifying : file-5.42-5.fc38.x86_64 4/153 Verifying : file-libs-5.42-5.fc38.x86_64 5/153 Verifying : glibc-2.36.9000-23.fc38.x86_64 6/153 Verifying : glibc-common-2.36.9000-23.fc38.x86_64 7/153 Verifying : glibc-gconv-extra-2.36.9000-23.fc38.x86_64 8/153 Verifying : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 9/153 Verifying : jansson-2.13.1-6.fc38.x86_64 10/153 Verifying : krb5-libs-1.20.1-7.fc38.x86_64 11/153 Verifying : libbrotli-1.0.9-11.fc38.x86_64 12/153 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 13/153 Verifying : libcurl-7.87.0-3.fc38.x86_64 14/153 Verifying : libevent-2.1.12-8.fc38.x86_64 15/153 Verifying : libnghttp2-1.51.0-2.fc38.x86_64 16/153 Verifying : libpsl-0.21.2-2.fc38.x86_64 17/153 Verifying : libpwquality-1.4.5-2.fc38.x86_64 18/153 Verifying : libxml2-2.10.3-3.fc38.x86_64 19/153 Verifying : rpm-4.18.0-10.fc38.x86_64 20/153 Verifying : rpm-build-4.18.0-10.fc38.x86_64 21/153 Verifying : rpm-build-libs-4.18.0-10.fc38.x86_64 22/153 Verifying : rpm-libs-4.18.0-10.fc38.x86_64 23/153 Verifying : rpmautospec-rpm-macros-0.3.1-2.fc38.noarch 24/153 Verifying : alternatives-1.21-1.fc38.x86_64 25/153 Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 26/153 Verifying : authselect-1.4.2-1.fc38.x86_64 27/153 Verifying : authselect-libs-1.4.2-1.fc38.x86_64 28/153 Verifying : basesystem-11-14.fc37.noarch 29/153 Verifying : bash-5.2.15-1.fc38.x86_64 30/153 Verifying : binutils-2.39-6.fc38.x86_64 31/153 Verifying : binutils-gold-2.39-6.fc38.x86_64 32/153 Verifying : bzip2-1.0.8-12.fc37.x86_64 33/153 Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 34/153 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 35/153 Verifying : coreutils-9.1-10.fc38.x86_64 36/153 Verifying : coreutils-common-9.1-10.fc38.x86_64 37/153 Verifying : cpio-2.13-13.fc38.x86_64 38/153 Verifying : cracklib-2.9.7-30.fc38.x86_64 39/153 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 40/153 Verifying : debugedit-5.0-5.fc37.x86_64 41/153 Verifying : diffutils-3.9-1.fc38.x86_64 42/153 Verifying : dwz-0.15-1.fc38.x86_64 43/153 Verifying : ed-1.19-1.fc38.x86_64 44/153 Verifying : efi-srpm-macros-5-6.fc37.noarch 45/153 Verifying : elfutils-0.188-3.fc38.x86_64 46/153 Verifying : elfutils-debuginfod-client-0.188-3.fc38.x86_64 47/153 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 48/153 Verifying : elfutils-libelf-0.188-3.fc38.x86_64 49/153 Verifying : elfutils-libs-0.188-3.fc38.x86_64 50/153 Verifying : fedora-gpg-keys-38-0.3.noarch 51/153 Verifying : fedora-release-38-0.15.noarch 52/153 Verifying : fedora-release-common-38-0.15.noarch 53/153 Verifying : fedora-release-identity-basic-38-0.15.noarch 54/153 Verifying : fedora-repos-38-0.3.noarch 55/153 Verifying : fedora-repos-rawhide-38-0.3.noarch 56/153 Verifying : filesystem-3.18-2.fc37.x86_64 57/153 Verifying : findutils-1:4.9.0-2.fc37.x86_64 58/153 Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 59/153 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 60/153 Verifying : gawk-5.1.1-4.fc37.x86_64 61/153 Verifying : gdb-minimal-12.1-10.fc38.x86_64 62/153 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 63/153 Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 64/153 Verifying : gmp-1:6.2.1-3.fc37.x86_64 65/153 Verifying : gnat-srpm-macros-5-1.fc38.noarch 66/153 Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 67/153 Verifying : grep-3.8-2.fc38.x86_64 68/153 Verifying : gzip-1.12-2.fc37.x86_64 69/153 Verifying : info-7.0.1-1.fc38.x86_64 70/153 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 71/153 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 72/153 Verifying : libacl-2.3.1-4.fc37.x86_64 73/153 Verifying : libarchive-3.6.1-3.fc38.x86_64 74/153 Verifying : libattr-2.5.1-5.fc37.x86_64 75/153 Verifying : libblkid-2.38.1-3.fc38.x86_64 76/153 Verifying : libcap-2.48-5.fc37.x86_64 77/153 Verifying : libcom_err-1.46.5-3.fc37.x86_64 78/153 Verifying : libdb-5.3.28-54.fc38.x86_64 79/153 Verifying : libeconf-0.4.0-4.fc37.x86_64 80/153 Verifying : libfdisk-2.38.1-3.fc38.x86_64 81/153 Verifying : libffi-3.4.4-1.fc38.x86_64 82/153 Verifying : libgcc-13.0.1-0.1.fc38.x86_64 83/153 Verifying : libgomp-13.0.1-0.1.fc38.x86_64 84/153 Verifying : libidn2-2.3.4-1.fc38.x86_64 85/153 Verifying : libmount-2.38.1-3.fc38.x86_64 86/153 Verifying : libnsl2-2.0.0-4.fc37.x86_64 87/153 Verifying : libpkgconf-1.8.0-3.fc37.x86_64 88/153 Verifying : libselinux-3.5-0.rc1.1.fc38.1.x86_64 89/153 Verifying : libsemanage-3.5-0.rc1.1.fc38.x86_64 90/153 Verifying : libsepol-3.5-0.rc1.1.fc38.x86_64 91/153 Verifying : libsigsegv-2.14-3.fc37.x86_64 92/153 Verifying : libsmartcols-2.38.1-3.fc38.x86_64 93/153 Verifying : libssh-0.10.4-2.fc38.x86_64 94/153 Verifying : libssh-config-0.10.4-2.fc38.noarch 95/153 Verifying : libstdc++-13.0.1-0.1.fc38.x86_64 96/153 Verifying : libtasn1-4.19.0-1.fc38.x86_64 97/153 Verifying : libtirpc-1.3.3-0.fc37.x86_64 98/153 Verifying : libunistring-1.0-2.fc37.x86_64 99/153 Verifying : libutempter-1.2.1-7.fc37.x86_64 100/153 Verifying : libuuid-2.38.1-3.fc38.x86_64 101/153 Verifying : libverto-0.3.2-4.fc37.x86_64 102/153 Verifying : libxcrypt-4.4.33-5.fc38.x86_64 103/153 Verifying : libzstd-1.5.2-3.fc37.x86_64 104/153 Verifying : lua-libs-5.4.4-7.fc38.x86_64 105/153 Verifying : lua-srpm-macros-1-7.fc37.noarch 106/153 Verifying : lz4-libs-1.9.4-1.fc38.x86_64 107/153 Verifying : mpfr-4.1.1-2.fc38.x86_64 108/153 Verifying : ncurses-base-6.4-2.20230114.fc38.noarch 109/153 Verifying : ncurses-libs-6.4-2.20230114.fc38.x86_64 110/153 Verifying : nettle-3.8-2.fc37.x86_64 111/153 Verifying : nim-srpm-macros-3-7.fc37.noarch 112/153 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 113/153 Verifying : openblas-srpm-macros-2-12.fc37.noarch 114/153 Verifying : openldap-2.6.3-1.fc38.x86_64 115/153 Verifying : openssl-libs-1:3.0.7-3.fc38.x86_64 116/153 Verifying : p11-kit-0.24.1-5.fc38.x86_64 117/153 Verifying : p11-kit-trust-0.24.1-5.fc38.x86_64 118/153 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 119/153 Verifying : pam-1.5.2-15.fc38.x86_64 120/153 Verifying : pam-libs-1.5.2-15.fc38.x86_64 121/153 Verifying : patch-2.7.6-17.fc37.x86_64 122/153 Verifying : pcre2-10.42-1.fc38.x86_64 123/153 Verifying : pcre2-syntax-10.42-1.fc38.noarch 124/153 Verifying : perl-srpm-macros-1-47.fc38.noarch 125/153 Verifying : pkgconf-1.8.0-3.fc37.x86_64 126/153 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 127/153 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 128/153 Verifying : popt-1.19-1.fc38.x86_64 129/153 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 130/153 Verifying : python-srpm-macros-3.11-7.fc38.noarch 131/153 Verifying : qt5-srpm-macros-5.15.8-1.fc38.noarch 132/153 Verifying : readline-8.2-2.fc38.x86_64 133/153 Verifying : redhat-rpm-config-245-1.fc38.noarch 134/153 Verifying : rpm-sequoia-1.2.0-1.fc38.x86_64 135/153 Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153 Verifying : sed-4.8-11.fc37.x86_64 137/153 Verifying : setup-2.14.3-1.fc38.noarch 138/153 Verifying : shadow-utils-2:4.13-3.fc38.x86_64 139/153 Verifying : sqlite-libs-3.40.1-1.fc38.x86_64 140/153 Verifying : systemd-libs-252.4-598.fc38.x86_64 141/153 Verifying : tar-2:1.34-5.fc38.x86_64 142/153 Verifying : tzdata-2022g-1.fc38.noarch 143/153 Verifying : unzip-6.0-58.fc38.x86_64 144/153 Verifying : util-linux-2.38.1-3.fc38.x86_64 145/153 Verifying : util-linux-core-2.38.1-3.fc38.x86_64 146/153 Verifying : which-2.21-36.fc38.x86_64 147/153 Verifying : xxhash-libs-0.8.1-3.fc37.x86_64 148/153 Verifying : xz-5.2.9-1.fc38.x86_64 149/153 Verifying : xz-libs-5.2.9-1.fc38.x86_64 150/153 Verifying : zip-3.0-35.fc38.x86_64 151/153 Verifying : zlib-1.2.13-2.fc38.x86_64 152/153 Verifying : zstd-1.5.2-3.fc37.x86_64 153/153 Installed: alternatives-1.21-1.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-3.fc38.x86_64 authselect-1.4.2-1.fc38.x86_64 authselect-libs-1.4.2-1.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.2.15-1.fc38.x86_64 binutils-2.39-6.fc38.x86_64 binutils-gold-2.39-6.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-10.fc38.x86_64 coreutils-common-9.1-10.fc38.x86_64 cpio-2.13-13.fc38.x86_64 cracklib-2.9.7-30.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch curl-7.87.0-3.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 debugedit-5.0-5.fc37.x86_64 diffutils-3.9-1.fc38.x86_64 dwz-0.15-1.fc38.x86_64 ed-1.19-1.fc38.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.15.noarch fedora-release-common-38-0.15.noarch fedora-release-identity-basic-38-0.15.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-5.fc38.x86_64 file-libs-5.42-5.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-12.1-10.fc38.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-23.fc38.x86_64 glibc-common-2.36.9000-23.fc38.x86_64 glibc-gconv-extra-2.36.9000-23.fc38.x86_64 glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-5-1.fc38.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-2.fc38.x86_64 gzip-1.12-2.fc37.x86_64 info-7.0.1-1.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.20.1-7.fc38.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-3.fc38.x86_64 libattr-2.5.1-5.fc37.x86_64 libblkid-2.38.1-3.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.87.0-3.fc38.x86_64 libdb-5.3.28-54.fc38.x86_64 libeconf-0.4.0-4.fc37.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-3.fc38.x86_64 libffi-3.4.4-1.fc38.x86_64 libgcc-13.0.1-0.1.fc38.x86_64 libgomp-13.0.1-0.1.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libmount-2.38.1-3.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-2.fc38.x86_64 libselinux-3.5-0.rc1.1.fc38.1.x86_64 libsemanage-3.5-0.rc1.1.fc38.x86_64 libsepol-3.5-0.rc1.1.fc38.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-3.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.1-0.1.fc38.x86_64 libtasn1-4.19.0-1.fc38.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 libuuid-2.38.1-3.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.33-5.fc38.x86_64 libxml2-2.10.3-3.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-7.fc38.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.4-1.fc38.x86_64 mpfr-4.1.1-2.fc38.x86_64 ncurses-base-6.4-2.20230114.fc38.noarch ncurses-libs-6.4-2.20230114.fc38.x86_64 nettle-3.8-2.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.7-3.fc38.x86_64 p11-kit-0.24.1-5.fc38.x86_64 p11-kit-trust-0.24.1-5.fc38.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.x86_64 pam-libs-1.5.2-15.fc38.x86_64 patch-2.7.6-17.fc37.x86_64 pcre2-10.42-1.fc38.x86_64 pcre2-syntax-10.42-1.fc38.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.x86_64 popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-7.fc38.noarch qt5-srpm-macros-5.15.8-1.fc38.noarch readline-8.2-2.fc38.x86_64 redhat-rpm-config-245-1.fc38.noarch rpm-4.18.0-10.fc38.x86_64 rpm-build-4.18.0-10.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 rpm-sequoia-1.2.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.3.1-2.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc37.x86_64 setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.x86_64 sqlite-libs-3.40.1-1.fc38.x86_64 systemd-libs-252.4-598.fc38.x86_64 tar-2:1.34-5.fc38.x86_64 tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.x86_64 util-linux-2.38.1-3.fc38.x86_64 util-linux-core-2.38.1-3.fc38.x86_64 which-2.21-36.fc38.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 xz-5.2.9-1.fc38.x86_64 xz-libs-5.2.9-1.fc38.x86_64 zip-3.0-35.fc38.x86_64 zlib-1.2.13-2.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: fedora-repos-rawhide-38-0.3.noarch ed-1.19-1.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 tzdata-2022g-1.fc38.noarch findutils-4.9.0-2.fc37.x86_64 libacl-2.3.1-4.fc37.x86_64 file-5.42-5.fc38.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 libcurl-7.87.0-3.fc38.x86_64 gawk-5.1.1-4.fc37.x86_64 libtasn1-4.19.0-1.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 gzip-1.12-2.fc37.x86_64 openssl-libs-3.0.7-3.fc38.x86_64 redhat-rpm-config-245-1.fc38.noarch sqlite-libs-3.40.1-1.fc38.x86_64 p11-kit-trust-0.24.1-5.fc38.x86_64 lua-libs-5.4.4-7.fc38.x86_64 readline-8.2-2.fc38.x86_64 fpc-srpm-macros-1.3-6.fc37.noarch openldap-2.6.3-1.fc38.x86_64 p11-kit-0.24.1-5.fc38.x86_64 audit-libs-3.0.9-3.fc38.x86_64 rpm-build-4.18.0-10.fc38.x86_64 glibc-gconv-extra-2.36.9000-23.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 elfutils-libs-0.188-3.fc38.x86_64 shadow-utils-4.13-3.fc38.x86_64 libeconf-0.4.0-4.fc37.x86_64 libbrotli-1.0.9-11.fc38.x86_64 zlib-1.2.13-2.fc38.x86_64 bash-5.2.15-1.fc38.x86_64 glibc-common-2.36.9000-23.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 rust-srpm-macros-23-1.fc38.noarch libstdc++-13.0.1-0.1.fc38.x86_64 systemd-libs-252.4-598.fc38.x86_64 cpio-2.13-13.fc38.x86_64 pcre2-10.42-1.fc38.x86_64 rpm-sequoia-1.2.0-1.fc38.x86_64 libxcrypt-4.4.33-5.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 binutils-gold-2.39-6.fc38.x86_64 xz-libs-5.2.9-1.fc38.x86_64 fonts-srpm-macros-2.0.5-10.fc38.noarch libarchive-3.6.1-3.fc38.x86_64 diffutils-3.9-1.fc38.x86_64 libsigsegv-2.14-3.fc37.x86_64 cracklib-2.9.7-30.fc38.x86_64 gdb-minimal-12.1-10.fc38.x86_64 elfutils-default-yama-scope-0.188-3.fc38.noarch debugedit-5.0-5.fc37.x86_64 curl-7.87.0-3.fc38.x86_64 python-srpm-macros-3.11-7.fc38.noarch unzip-6.0-58.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libdb-5.3.28-54.fc38.x86_64 coreutils-common-9.1-10.fc38.x86_64 ncurses-libs-6.4-2.20230114.fc38.x86_64 fedora-release-identity-basic-38-0.15.noarch fedora-release-38-0.15.noarch util-linux-2.38.1-3.fc38.x86_64 dwz-0.15-1.fc38.x86_64 gnat-srpm-macros-5-1.fc38.noarch rpmautospec-rpm-macros-0.3.1-2.fc38.noarch ghc-srpm-macros-1.5.0-7.fc37.noarch util-linux-core-2.38.1-3.fc38.x86_64 patch-2.7.6-17.fc37.x86_64 rpm-4.18.0-10.fc38.x86_64 libxml2-2.10.3-3.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch coreutils-9.1-10.fc38.x86_64 binutils-2.39-6.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 elfutils-libelf-0.188-3.fc38.x86_64 qt5-srpm-macros-5.15.8-1.fc38.noarch elfutils-debuginfod-client-0.188-3.fc38.x86_64 libunistring-1.0-2.fc37.x86_64 libevent-2.1.12-8.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 libffi-3.4.4-1.fc38.x86_64 elfutils-0.188-3.fc38.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libsepol-3.5-0.rc1.1.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 libmount-2.38.1-3.fc38.x86_64 go-srpm-macros-3.2.0-1.fc38.noarch ocaml-srpm-macros-7-2.fc37.noarch libfdisk-2.38.1-3.fc38.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch lz4-libs-1.9.4-1.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 authselect-libs-1.4.2-1.fc38.x86_64 fedora-repos-38-0.3.noarch basesystem-11-14.fc37.noarch libuuid-2.38.1-3.fc38.x86_64 libgcc-13.0.1-0.1.fc38.x86_64 info-7.0.1-1.fc38.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 pam-1.5.2-15.fc38.x86_64 which-2.21-36.fc38.x86_64 libattr-2.5.1-5.fc37.x86_64 krb5-libs-1.20.1-7.fc38.x86_64 libselinux-3.5-0.rc1.1.fc38.1.x86_64 alternatives-1.21-1.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch gpg-pubkey-eb10b464-6202d9c6 zip-3.0-35.fc38.x86_64 efi-srpm-macros-5-6.fc37.noarch libpwquality-1.4.5-2.fc38.x86_64 pam-libs-1.5.2-15.fc38.x86_64 fedora-release-common-38-0.15.noarch gmp-6.2.1-3.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 lua-srpm-macros-1-7.fc37.noarch publicsuffix-list-dafsa-20221208-1.fc38.noarch zstd-1.5.2-3.fc37.x86_64 setup-2.14.3-1.fc38.noarch nim-srpm-macros-3-7.fc37.noarch libnghttp2-1.51.0-2.fc38.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch libpkgconf-1.8.0-3.fc37.x86_64 gpg-pubkey-5323552a-6112bcdc mpfr-4.1.1-2.fc38.x86_64 openblas-srpm-macros-2-12.fc37.noarch libpsl-0.21.2-2.fc38.x86_64 glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 sed-4.8-11.fc37.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch libidn2-2.3.4-1.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 grep-3.8-2.fc38.x86_64 libsmartcols-2.38.1-3.fc38.x86_64 gdbm-libs-1.23-2.fc37.x86_64 popt-1.19-1.fc38.x86_64 pcre2-syntax-10.42-1.fc38.noarch pkgconf-1.8.0-3.fc37.x86_64 glibc-2.36.9000-23.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch libgomp-13.0.1-0.1.fc38.x86_64 file-libs-5.42-5.fc38.x86_64 tar-1.34-5.fc38.x86_64 ncurses-base-6.4-2.20230114.fc38.noarch nettle-3.8-2.fc37.x86_64 libcap-2.48-5.fc37.x86_64 pkgconf-pkg-config-1.8.0-3.fc37.x86_64 perl-srpm-macros-1-47.fc38.noarch xz-5.2.9-1.fc38.x86_64 libblkid-2.38.1-3.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 libsemanage-3.5-0.rc1.1.fc38.x86_64 authselect-1.4.2-1.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1673913600 Wrote: /builddir/build/SRPMS/seqan-1.4.2-51.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-5wzogosa/seqan/seqan.spec) Config(child) 1 minutes 2 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/seqan-1.4.2-51.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674330940.908942 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/seqan-1.4.2-51.fc38.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674330940.908942/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674330940.908942/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 14 kB/s | 3.7 kB 00:00 fedora 86 kB/s | 21 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for seqan-1.4.2-51.fc38.src.rpm Start: build setup for seqan-1.4.2-51.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1673913600 Wrote: /builddir/build/SRPMS/seqan-1.4.2-51.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 36 kB/s | 3.7 kB 00:00 fedora 86 kB/s | 21 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: boost-devel x86_64 1.78.0-11.fc38 copr_base 11 M bzip2-devel x86_64 1.0.8-12.fc37 fedora 214 k cmake x86_64 3.25.2-1.fc38 copr_base 6.9 M coin-or-lemon-devel x86_64 1.3.1-25.fc37 fedora 304 k gcc x86_64 13.0.1-0.1.fc38 fedora 34 M gcc-c++ x86_64 13.0.1-0.1.fc38 fedora 13 M java-1.8.0-openjdk-devel x86_64 1:1.8.0.352.b08-1.fc38 fedora 9.3 M libstdc++-static x86_64 13.0.1-0.1.fc38 fedora 886 k llvm-devel x86_64 15.0.7-2.fc38 copr_base 3.4 M make x86_64 1:4.4-1.fc38 fedora 580 k python3-devel x86_64 3.11.1-3.fc38 copr_base 235 k python3-setuptools noarch 65.5.1-1.fc38 fedora 1.7 M qt-devel x86_64 1:4.8.7-70.fc38 fedora 10 M zlib-devel x86_64 1.2.13-2.fc38 fedora 45 k Installing dependencies: Lmod x86_64 8.7.18-1.fc38 fedora 258 k MUMPS x86_64 5.5.1-1.fc38 fedora 2.0 M MUMPS-common noarch 5.5.1-1.fc38 fedora 830 k alsa-lib x86_64 1.2.8-2.fc38 fedora 517 k annobin-docs noarch 11.06-2.fc38 fedora 93 k annobin-plugin-gcc x86_64 11.06-2.fc38 fedora 890 k avahi-libs x86_64 0.8-19.fc38 fedora 67 k boost x86_64 1.78.0-11.fc38 copr_base 14 k boost-atomic x86_64 1.78.0-11.fc38 copr_base 20 k boost-chrono x86_64 1.78.0-11.fc38 copr_base 27 k boost-container x86_64 1.78.0-11.fc38 copr_base 40 k boost-context x86_64 1.78.0-11.fc38 copr_base 17 k boost-contract x86_64 1.78.0-11.fc38 copr_base 47 k boost-coroutine x86_64 1.78.0-11.fc38 copr_base 22 k boost-date-time x86_64 1.78.0-11.fc38 copr_base 16 k boost-fiber x86_64 1.78.0-11.fc38 copr_base 42 k boost-filesystem x86_64 1.78.0-11.fc38 copr_base 65 k boost-graph x86_64 1.78.0-11.fc38 copr_base 151 k boost-iostreams x86_64 1.78.0-11.fc38 copr_base 42 k boost-json x86_64 1.78.0-11.fc38 copr_base 111 k boost-locale x86_64 1.78.0-11.fc38 copr_base 221 k boost-log x86_64 1.78.0-11.fc38 copr_base 492 k boost-math x86_64 1.78.0-11.fc38 copr_base 199 k boost-nowide x86_64 1.78.0-11.fc38 copr_base 21 k boost-numpy3 x86_64 1.78.0-11.fc38 copr_base 30 k boost-program-options x86_64 1.78.0-11.fc38 copr_base 109 k boost-python3 x86_64 1.78.0-11.fc38 copr_base 97 k boost-random x86_64 1.78.0-11.fc38 copr_base 26 k boost-regex x86_64 1.78.0-11.fc38 copr_base 112 k boost-serialization x86_64 1.78.0-11.fc38 copr_base 135 k boost-stacktrace x86_64 1.78.0-11.fc38 copr_base 31 k boost-system x86_64 1.78.0-11.fc38 copr_base 16 k boost-test x86_64 1.78.0-11.fc38 copr_base 238 k boost-thread x86_64 1.78.0-11.fc38 copr_base 60 k boost-timer x86_64 1.78.0-11.fc38 copr_base 26 k boost-type_erasure x86_64 1.78.0-11.fc38 copr_base 35 k boost-wave x86_64 1.78.0-11.fc38 copr_base 224 k brotli x86_64 1.0.9-11.fc38 copr_base 316 k brotli-devel x86_64 1.0.9-11.fc38 copr_base 32 k byte-buddy noarch 1.12.10-2.fc38 fedora 2.9 M byte-buddy-agent noarch 1.12.10-2.fc38 fedora 65 k cairo x86_64 1.17.6-2.fc37 fedora 676 k cliquer-libs x86_64 1.22-4.fc37 fedora 38 k cmake-data noarch 3.25.2-1.fc38 copr_base 1.7 M cmake-filesystem x86_64 3.25.2-1.fc38 copr_base 17 k cmake-rpm-macros noarch 3.25.2-1.fc38 copr_base 17 k coin-or-Cbc x86_64 2.10.5-10.fc37 fedora 824 k coin-or-Cgl x86_64 0.60.3-8.fc38 fedora 428 k coin-or-Clp x86_64 1.17.6-11.fc38 fedora 926 k coin-or-CoinUtils x86_64 2.11.4-8.fc38 fedora 478 k coin-or-Osi x86_64 0.108.6-6.fc37 fedora 317 k coin-or-lemon x86_64 1.3.1-25.fc37 fedora 81 k copy-jdk-configs noarch 4.1-1.fc38 fedora 28 k cpp x86_64 13.0.1-0.1.fc38 fedora 11 M crypto-policies-scripts noarch 20221215-2.gita4c31a3.fc38 copr_base 104 k cups-libs x86_64 1:2.4.2-5.fc38 fedora 268 k dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k emacs-filesystem noarch 1:28.2-1.fc38 fedora 7.1 k expat x86_64 2.5.0-1.fc38 fedora 110 k flexiblas x86_64 3.3.0-1.fc38 fedora 32 k flexiblas-netlib x86_64 3.3.0-1.fc38 fedora 3.2 M flexiblas-openblas-openmp x86_64 3.3.0-1.fc38 fedora 17 k fontconfig x86_64 2.14.1-2.fc38 fedora 294 k fontconfig-devel x86_64 2.14.1-2.fc38 fedora 164 k fonts-filesystem noarch 1:2.0.5-10.fc38 fedora 8.0 k freetype x86_64 2.12.1-3.fc37 fedora 407 k freetype-devel x86_64 2.12.1-3.fc37 fedora 895 k gc x86_64 8.2.2-1.fc38 fedora 110 k gcc-plugin-annobin x86_64 13.0.1-0.1.fc38 fedora 30 k gecode x86_64 6.2.0-10.fc37 fedora 3.2 M gettext x86_64 0.21.1-1.fc38 fedora 1.0 M gettext-envsubst x86_64 0.21.1-1.fc38 fedora 36 k gettext-libs x86_64 0.21.1-1.fc38 fedora 319 k gettext-runtime x86_64 0.21.1-1.fc38 fedora 117 k gl-manpages noarch 1.1-25.20190306.fc37 fedora 1.2 M glib2 x86_64 2.74.1-3.fc38 copr_base 2.7 M glib2-devel x86_64 2.74.1-3.fc38 copr_base 516 k glibc-devel x86_64 2.36.9000-23.fc38 copr_base 46 k glibc-headers-x86 noarch 2.36.9000-23.fc38 copr_base 454 k glpk x86_64 5.0-5.fc37 fedora 383 k glx-utils x86_64 8.4.0-14.20210504git0f9e7d9.fc37 fedora 41 k gnutls x86_64 3.7.8-11.fc38 copr_base 1.1 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-9.fc38 fedora 18 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-9.fc38 fedora 729 k graphite2 x86_64 1.3.14-11.fc38 copr_base 95 k graphite2-devel x86_64 1.3.14-11.fc38 copr_base 21 k gsl x86_64 2.7.1-3.fc38 fedora 1.1 M guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M harfbuzz x86_64 6.0.0-2.fc38 fedora 819 k harfbuzz-devel x86_64 6.0.0-2.fc38 fedora 394 k harfbuzz-icu x86_64 6.0.0-2.fc38 fedora 16 k hwdata noarch 0.366-1.fc38 fedora 1.5 M jacop noarch 4.8-9.fc37 fedora 1.7 M java-1.8.0-openjdk x86_64 1:1.8.0.352.b08-1.fc38 fedora 466 k java-1.8.0-openjdk-headless x86_64 1:1.8.0.352.b08-1.fc38 fedora 33 M java-17-openjdk-headless x86_64 1:17.0.6.0.9-0.2.ea.fc38 fedora 42 M java-diff-utils noarch 4.12-1.fc37 fedora 78 k javapackages-filesystem noarch 6.1.0-6.fc38 copr_base 13 k javapackages-tools noarch 6.1.0-6.fc38 copr_base 33 k jbigkit-libs x86_64 2.1-24.fc37 fedora 53 k jline-builtins noarch 3.22.0-1.fc38 fedora 274 k jline-reader noarch 3.22.0-1.fc38 fedora 173 k jline-style noarch 3.22.0-1.fc38 fedora 35 k jline-terminal noarch 3.22.0-1.fc38 fedora 295 k jline-terminal-jna noarch 3.22.0-1.fc38 fedora 72 k jna x86_64 5.13.0-1.fc38 fedora 288 k jsoncpp x86_64 1.9.5-4.fc38 copr_base 97 k kernel-headers x86_64 6.2.0-0.rc4.git0.1.fc38 fedora 1.5 M langpacks-core-font-en noarch 3.0-27.fc38 fedora 9.9 k lcms2 x86_64 2.14-1.fc38 fedora 176 k libICE x86_64 1.0.10-9.fc37 fedora 71 k libICE-devel x86_64 1.0.10-9.fc37 fedora 46 k libSM x86_64 1.2.3-11.fc37 fedora 42 k libSM-devel x86_64 1.2.3-11.fc37 fedora 12 k libX11 x86_64 1.8.3-2.fc38 fedora 649 k libX11-common noarch 1.8.3-2.fc38 fedora 178 k libX11-devel x86_64 1.8.3-2.fc38 fedora 1.0 M libX11-xcb x86_64 1.8.3-2.fc38 fedora 11 k libXau x86_64 1.0.11-1.fc38 fedora 31 k libXau-devel x86_64 1.0.11-1.fc38 fedora 13 k libXcomposite x86_64 0.4.5-8.fc37 fedora 23 k libXcursor x86_64 1.2.1-2.fc37 fedora 30 k libXcursor-devel x86_64 1.2.1-2.fc37 fedora 40 k libXext x86_64 1.3.5-1.fc38 fedora 39 k libXext-devel x86_64 1.3.5-1.fc38 fedora 85 k libXfixes x86_64 6.0.0-4.fc37 fedora 19 k libXfixes-devel x86_64 6.0.0-4.fc37 fedora 12 k libXft x86_64 2.3.6-1.fc38 fedora 71 k libXft-devel x86_64 2.3.6-1.fc38 fedora 50 k libXi x86_64 1.8-3.fc37 fedora 39 k libXi-devel x86_64 1.8-3.fc37 fedora 116 k libXinerama x86_64 1.1.5-1.fc38 fedora 14 k libXinerama-devel x86_64 1.1.5-1.fc38 fedora 13 k libXrandr x86_64 1.5.2-9.fc37 fedora 27 k libXrandr-devel x86_64 1.5.2-9.fc37 fedora 19 k libXrender x86_64 0.9.11-1.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-1.fc38 fedora 19 k libXt x86_64 1.2.1-3.fc37 fedora 180 k libXt-devel x86_64 1.2.1-3.fc37 fedora 460 k libXtst x86_64 1.2.4-1.fc38 fedora 20 k libXv x86_64 1.0.11-17.fc37 fedora 18 k libXv-devel x86_64 1.0.11-17.fc37 fedora 44 k libXxf86vm x86_64 1.1.5-1.fc38 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid-devel x86_64 2.38.1-3.fc38 fedora 16 k libdrm x86_64 2.4.114-1.fc38 fedora 159 k libedit x86_64 3.1-44.20221030cvs.fc38 fedora 106 k libedit-devel x86_64 3.1-44.20221030cvs.fc38 fedora 40 k libevdev x86_64 1.13.0-2.fc38 copr_base 45 k libffi-devel x86_64 3.4.4-1.fc38 fedora 28 k libfontenc x86_64 1.1.6-1.fc38 fedora 32 k libgfortran x86_64 13.0.1-0.1.fc38 fedora 889 k libglvnd x86_64 1:1.6.0-1.fc38 fedora 134 k libglvnd-core-devel x86_64 1:1.6.0-1.fc38 fedora 17 k libglvnd-devel x86_64 1:1.6.0-1.fc38 fedora 163 k libglvnd-egl x86_64 1:1.6.0-1.fc38 fedora 36 k libglvnd-gles x86_64 1:1.6.0-1.fc38 fedora 31 k libglvnd-glx x86_64 1:1.6.0-1.fc38 fedora 140 k libglvnd-opengl x86_64 1:1.6.0-1.fc38 fedora 42 k libgudev x86_64 237-3.fc37 fedora 35 k libicu x86_64 72.1-1.fc38 fedora 10 M libicu-devel x86_64 72.1-1.fc38 fedora 918 k libinput x86_64 1.22.1-2.fc38 copr_base 200 k libjpeg-turbo x86_64 2.1.4-1.fc38 fedora 181 k libmng x86_64 2.0.3-16.fc37 fedora 187 k libmount-devel x86_64 2.38.1-3.fc38 fedora 18 k libmpc x86_64 1.3.1-1.fc38 fedora 70 k libnauty x86_64 2.8.6-1.fc38 fedora 597 k libpciaccess x86_64 0.16-7.fc37 fedora 27 k libpng x86_64 2:1.6.37-13.fc37 fedora 119 k libpng-devel x86_64 2:1.6.37-13.fc37 fedora 290 k libquadmath x86_64 13.0.1-0.1.fc38 fedora 179 k libquadmath-devel x86_64 13.0.1-0.1.fc38 fedora 20 k libselinux-devel x86_64 3.5-0.rc1.1.fc38.1 fedora 150 k libsepol-devel x86_64 3.5-0.rc1.1.fc38 fedora 49 k libstdc++-devel x86_64 13.0.1-0.1.fc38 fedora 2.6 M libtiff x86_64 4.4.0-4.fc37 fedora 197 k libtool-ltdl x86_64 2.4.7-5.fc38 fedora 37 k libuv x86_64 1:1.44.2-2.fc37 fedora 151 k libwacom x86_64 2.4.0-1.fc37 fedora 42 k libwacom-data noarch 2.4.0-1.fc37 fedora 180 k libwayland-client x86_64 1.21.0-1.fc37 fedora 33 k libwayland-server x86_64 1.21.0-1.fc37 fedora 41 k libwebp x86_64 1.3.0-1.fc38 fedora 283 k libxcb x86_64 1.13.1-11.fc38 copr_base 226 k libxcb-devel x86_64 1.13.1-11.fc38 copr_base 1.0 M libxcrypt-devel x86_64 4.4.33-5.fc38 fedora 30 k libxkbcommon x86_64 1.5.0-1.fc38 fedora 140 k libxkbcommon-x11 x86_64 1.5.0-1.fc38 fedora 22 k libxml2-devel x86_64 2.10.3-3.fc38 copr_base 502 k libxshmfence x86_64 1.3-11.fc37 fedora 12 k lksctp-tools x86_64 1.0.19-2.fc37 fedora 91 k llvm x86_64 15.0.7-2.fc38 copr_base 14 M llvm-libs x86_64 15.0.7-2.fc38 copr_base 25 M llvm-static x86_64 15.0.7-2.fc38 copr_base 32 M llvm-test x86_64 15.0.7-2.fc38 copr_base 582 k lua x86_64 5.4.4-7.fc38 fedora 189 k lua-filesystem x86_64 1.8.0-7.fc37 fedora 34 k lua-json noarch 1.3.4-2.fc37 fedora 30 k lua-lpeg x86_64 1.0.2-9.fc37 fedora 67 k lua-posix x86_64 35.1-4.fc37 fedora 139 k lua-term x86_64 0.07-16.fc37 fedora 15 k mesa-libEGL x86_64 22.3.3-2.fc38 copr_base 130 k mesa-libGL x86_64 22.3.3-2.fc38 copr_base 176 k mesa-libGLU x86_64 9.0.1-7.fc37 fedora 153 k mesa-libGLU-devel x86_64 9.0.1-7.fc37 fedora 13 k mesa-libgbm x86_64 22.3.3-2.fc38 copr_base 45 k mesa-libglapi x86_64 22.3.3-2.fc38 copr_base 54 k metis x86_64 5.1.0-33.fc37 fedora 573 k mkfontscale x86_64 1.2.2-2.fc37 fedora 32 k mockito noarch 3.12.4-5.fc38 fedora 583 k mp x86_64 3.1.0-41.20200303git7fd4828.fc38 copr_base 973 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mtdev x86_64 1.1.6-4.fc37 fedora 20 k ncurses-c++-libs x86_64 6.4-2.20230114.fc38 fedora 37 k ncurses-devel x86_64 6.4-2.20230114.fc38 fedora 549 k nspr x86_64 4.35.0-3.fc38 fedora 136 k nss x86_64 3.87.0-1.fc38 fedora 692 k nss-softokn x86_64 3.87.0-1.fc38 fedora 1.0 M nss-softokn-freebl x86_64 3.87.0-1.fc38 fedora 326 k nss-sysinit x86_64 3.87.0-1.fc38 fedora 18 k nss-util x86_64 3.87.0-1.fc38 fedora 86 k objectweb-asm noarch 9.3-4.fc38 fedora 354 k objenesis noarch 3.3-1.fc38 fedora 115 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M opentest4j noarch 1.2.0-11.fc38 fedora 24 k pcre2-devel x86_64 10.42-1.fc38 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38 fedora 213 k pcre2-utf32 x86_64 10.42-1.fc38 fedora 201 k pixman x86_64 0.40.0-6.fc37 fedora 277 k procps-ng x86_64 3.3.17-8.fc38 fedora 339 k pyproject-rpm-macros noarch 1.5.1-2.fc38 copr_base 41 k python-pip-wheel noarch 22.3.1-2.fc38 copr_base 1.4 M python-rpm-macros noarch 3.11-7.fc38 fedora 20 k python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 x86_64 3.11.1-3.fc38 copr_base 28 k python3-libs x86_64 3.11.1-3.fc38 copr_base 9.2 M python3-numpy x86_64 1:1.23.5-2.fc38 copr_base 7.3 M python3-packaging noarch 23.0-1.fc38 copr_base 98 k python3-rpm-generators noarch 14-1.fc38 fedora 30 k python3-rpm-macros noarch 3.11-7.fc38 fedora 15 k qt x86_64 1:4.8.7-70.fc38 fedora 4.7 M qt-common noarch 1:4.8.7-70.fc38 fedora 7.5 k qt-settings noarch 37.0-1.fc38 fedora 11 k qt-x11 x86_64 1:4.8.7-70.fc38 fedora 13 M qt5-qtbase x86_64 5.15.8-2.fc38 fedora 3.6 M qt5-qtbase-common noarch 5.15.8-2.fc38 fedora 11 k qt5-qtbase-gui x86_64 5.15.8-2.fc38 fedora 6.4 M rhash x86_64 1.4.3-1.fc38 fedora 193 k scala noarch 2.13.10-1.fc38 fedora 10 M scala-library noarch 2.13.10-1.fc38 fedora 5.0 M scala-reflect noarch 2.13.10-1.fc38 fedora 3.2 M scotch x86_64 6.1.2-3.fc37 fedora 397 k suitesparse x86_64 5.13.0-1.fc38 fedora 1.1 M sysprof-capture-devel x86_64 3.46.0-1.fc38 fedora 58 k tcl x86_64 1:8.6.12-3.fc38 fedora 1.1 M ttmkfdir x86_64 3.0.9-66.fc37 fedora 54 k tzdata-java noarch 2022g-1.fc38 fedora 208 k unixODBC x86_64 2.3.11-1.fc38 fedora 486 k vim-filesystem noarch 2:9.0.1221-1.fc38 fedora 18 k xcb-util x86_64 0.4.1-1.fc38 fedora 18 k xcb-util-image x86_64 0.4.1-1.fc38 fedora 19 k xcb-util-keysyms x86_64 0.4.1-1.fc38 fedora 14 k xcb-util-renderutil x86_64 0.3.10-1.fc38 fedora 17 k xcb-util-wm x86_64 0.4.2-1.fc38 fedora 31 k xkeyboard-config noarch 2.36-3.fc38 fedora 956 k xml-common noarch 0.6.3-59.fc37 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-34.fc37 fedora 505 k xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k xz-devel x86_64 5.2.9-1.fc38 fedora 58 k Transaction Summary ======================================================================================== Install 285 Packages Total size: 406 M Total download size: 242 M Installed size: 1.7 G Downloading Packages: [SKIPPED] brotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] brotli-devel-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.25.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-scripts-20221215-2.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] glib2-2.74.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] glib2-devel-2.74.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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libmng-2.0.3-16.fc37.x86_64.rpm 2.0 MB/s | 187 kB 00:00 (239/285): libquadmath-devel-13.0.1-0.1.fc38.x8 213 kB/s | 20 kB 00:00 (240/285): libnauty-2.8.6-1.fc38.x86_64.rpm 3.9 MB/s | 597 kB 00:00 (241/285): libuv-1.44.2-2.fc37.x86_64.rpm 1.3 MB/s | 151 kB 00:00 (242/285): libstdc++-static-13.0.1-0.1.fc38.x86 5.6 MB/s | 886 kB 00:00 (243/285): libwacom-2.4.0-1.fc37.x86_64.rpm 415 kB/s | 42 kB 00:00 (244/285): libwacom-data-2.4.0-1.fc37.noarch.rp 1.8 MB/s | 180 kB 00:00 (245/285): libxkbcommon-x11-1.5.0-1.fc38.x86_64 172 kB/s | 22 kB 00:00 (246/285): lksctp-tools-1.0.19-2.fc37.x86_64.rp 790 kB/s | 91 kB 00:00 (247/285): lua-filesystem-1.8.0-7.fc37.x86_64.r 364 kB/s | 34 kB 00:00 (248/285): lua-json-1.3.4-2.fc37.noarch.rpm 349 kB/s | 30 kB 00:00 (249/285): lua-lpeg-1.0.2-9.fc37.x86_64.rpm 709 kB/s | 67 kB 00:00 (250/285): lua-posix-35.1-4.fc37.x86_64.rpm 1.5 MB/s | 139 kB 00:00 (251/285): java-17-openjdk-headless-17.0.6.0.9- 16 MB/s | 42 MB 00:02 (252/285): lua-term-0.07-16.fc37.x86_64.rpm 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qt5-qtbase-common-5.15.8-2.fc38.noar 133 kB/s | 11 kB 00:00 (268/285): rhash-1.4.3-1.fc38.x86_64.rpm 2.3 MB/s | 193 kB 00:00 (269/285): qt5-qtbase-gui-5.15.8-2.fc38.x86_64. 20 MB/s | 6.4 MB 00:00 (270/285): qt-x11-4.8.7-70.fc38.x86_64.rpm 16 MB/s | 13 MB 00:00 (271/285): scala-library-2.13.10-1.fc38.noarch. 17 MB/s | 5.0 MB 00:00 (272/285): scala-2.13.10-1.fc38.noarch.rpm 20 MB/s | 10 MB 00:00 (273/285): scotch-6.1.2-3.fc37.x86_64.rpm 4.0 MB/s | 397 kB 00:00 (274/285): suitesparse-5.13.0-1.fc38.x86_64.rpm 9.5 MB/s | 1.1 MB 00:00 (275/285): scala-reflect-2.13.10-1.fc38.noarch. 13 MB/s | 3.2 MB 00:00 (276/285): ttmkfdir-3.0.9-66.fc37.x86_64.rpm 148 kB/s | 54 kB 00:00 (277/285): tzdata-java-2022g-1.fc38.noarch.rpm 584 kB/s | 208 kB 00:00 (278/285): tcl-8.6.12-3.fc38.x86_64.rpm 2.7 MB/s | 1.1 MB 00:00 (279/285): unixODBC-2.3.11-1.fc38.x86_64.rpm 5.0 MB/s | 486 kB 00:00 (280/285): xcb-util-0.4.1-1.fc38.x86_64.rpm 210 kB/s | 18 kB 00:00 (281/285): xcb-util-image-0.4.1-1.fc38.x86_64.r 199 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-1.fc38.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.6.0.9-0.2.ea.fc38.x8 1/1 Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.352.b08-1.fc38.x 1/1 Preparing : 1/1 Installing : javapackages-filesystem-6.1.0-6.fc38.noarch 1/285 Installing : xorg-x11-proto-devel-2022.2-2.fc38.noarch 2/285 Installing : boost-system-1.78.0-11.fc38.x86_64 3/285 Installing : libicu-72.1-1.fc38.x86_64 4/285 Installing : boost-chrono-1.78.0-11.fc38.x86_64 5/285 Installing : boost-thread-1.78.0-11.fc38.x86_64 6/285 Installing : nspr-4.35.0-3.fc38.x86_64 7/285 Installing : libpng-2:1.6.37-13.fc37.x86_64 8/285 Installing : libglvnd-1:1.6.0-1.fc38.x86_64 9/285 Installing : libICE-1.0.10-9.fc37.x86_64 10/285 Installing : expat-2.5.0-1.fc38.x86_64 11/285 Installing : cmake-filesystem-3.25.2-1.fc38.x86_64 12/285 Installing : libSM-1.2.3-11.fc37.x86_64 13/285 Installing : nss-util-3.87.0-1.fc38.x86_64 14/285 Installing : 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: kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64 137/285 Verifying : langpacks-core-font-en-3.0-27.fc38.noarch 138/285 Verifying : lcms2-2.14-1.fc38.x86_64 139/285 Verifying : libICE-1.0.10-9.fc37.x86_64 140/285 Verifying : libICE-devel-1.0.10-9.fc37.x86_64 141/285 Verifying : libSM-1.2.3-11.fc37.x86_64 142/285 Verifying : libSM-devel-1.2.3-11.fc37.x86_64 143/285 Verifying : libX11-1.8.3-2.fc38.x86_64 144/285 Verifying : libX11-common-1.8.3-2.fc38.noarch 145/285 Verifying : libX11-devel-1.8.3-2.fc38.x86_64 146/285 Verifying : libX11-xcb-1.8.3-2.fc38.x86_64 147/285 Verifying : libXau-1.0.11-1.fc38.x86_64 148/285 Verifying : libXau-devel-1.0.11-1.fc38.x86_64 149/285 Verifying : libXcomposite-0.4.5-8.fc37.x86_64 150/285 Verifying : libXcursor-1.2.1-2.fc37.x86_64 151/285 Verifying : libXcursor-devel-1.2.1-2.fc37.x86_64 152/285 Verifying : libXext-1.3.5-1.fc38.x86_64 153/285 Verifying : libXext-devel-1.3.5-1.fc38.x86_64 154/285 Verifying : libXfixes-6.0.0-4.fc37.x86_64 155/285 Verifying : libXfixes-devel-6.0.0-4.fc37.x86_64 156/285 Verifying : libXft-2.3.6-1.fc38.x86_64 157/285 Verifying : libXft-devel-2.3.6-1.fc38.x86_64 158/285 Verifying : libXi-1.8-3.fc37.x86_64 159/285 Verifying : libXi-devel-1.8-3.fc37.x86_64 160/285 Verifying : libXinerama-1.1.5-1.fc38.x86_64 161/285 Verifying : libXinerama-devel-1.1.5-1.fc38.x86_64 162/285 Verifying : libXrandr-1.5.2-9.fc37.x86_64 163/285 Verifying : libXrandr-devel-1.5.2-9.fc37.x86_64 164/285 Verifying : libXrender-0.9.11-1.fc38.x86_64 165/285 Verifying : libXrender-devel-0.9.11-1.fc38.x86_64 166/285 Verifying : libXt-1.2.1-3.fc37.x86_64 167/285 Verifying : libXt-devel-1.2.1-3.fc37.x86_64 168/285 Verifying : libXtst-1.2.4-1.fc38.x86_64 169/285 Verifying : libXv-1.0.11-17.fc37.x86_64 170/285 Verifying : libXv-devel-1.0.11-17.fc37.x86_64 171/285 Verifying : libXxf86vm-1.1.5-1.fc38.x86_64 172/285 Verifying : libb2-0.98.1-7.fc37.x86_64 173/285 Verifying : libblkid-devel-2.38.1-3.fc38.x86_64 174/285 Verifying : libdrm-2.4.114-1.fc38.x86_64 175/285 Verifying : libedit-3.1-44.20221030cvs.fc38.x86_64 176/285 Verifying : libedit-devel-3.1-44.20221030cvs.fc38.x86_64 177/285 Verifying : libffi-devel-3.4.4-1.fc38.x86_64 178/285 Verifying : libfontenc-1.1.6-1.fc38.x86_64 179/285 Verifying : libgfortran-13.0.1-0.1.fc38.x86_64 180/285 Verifying : libglvnd-1:1.6.0-1.fc38.x86_64 181/285 Verifying : libglvnd-core-devel-1:1.6.0-1.fc38.x86_64 182/285 Verifying : libglvnd-devel-1:1.6.0-1.fc38.x86_64 183/285 Verifying : libglvnd-egl-1:1.6.0-1.fc38.x86_64 184/285 Verifying : libglvnd-gles-1:1.6.0-1.fc38.x86_64 185/285 Verifying : libglvnd-glx-1:1.6.0-1.fc38.x86_64 186/285 Verifying : libglvnd-opengl-1:1.6.0-1.fc38.x86_64 187/285 Verifying : libgudev-237-3.fc37.x86_64 188/285 Verifying : libicu-72.1-1.fc38.x86_64 189/285 Verifying : libicu-devel-72.1-1.fc38.x86_64 190/285 Verifying : libjpeg-turbo-2.1.4-1.fc38.x86_64 191/285 Verifying : libmng-2.0.3-16.fc37.x86_64 192/285 Verifying : libmount-devel-2.38.1-3.fc38.x86_64 193/285 Verifying : libmpc-1.3.1-1.fc38.x86_64 194/285 Verifying : libnauty-2.8.6-1.fc38.x86_64 195/285 Verifying : libpciaccess-0.16-7.fc37.x86_64 196/285 Verifying : libpng-2:1.6.37-13.fc37.x86_64 197/285 Verifying : libpng-devel-2:1.6.37-13.fc37.x86_64 198/285 Verifying : libquadmath-13.0.1-0.1.fc38.x86_64 199/285 Verifying : libquadmath-devel-13.0.1-0.1.fc38.x86_64 200/285 Verifying : libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64 201/285 Verifying : libsepol-devel-3.5-0.rc1.1.fc38.x86_64 202/285 Verifying : libstdc++-devel-13.0.1-0.1.fc38.x86_64 203/285 Verifying : libstdc++-static-13.0.1-0.1.fc38.x86_64 204/285 Verifying : libtiff-4.4.0-4.fc37.x86_64 205/285 Verifying : libtool-ltdl-2.4.7-5.fc38.x86_64 206/285 Verifying : libuv-1:1.44.2-2.fc37.x86_64 207/285 Verifying : libwacom-2.4.0-1.fc37.x86_64 208/285 Verifying : libwacom-data-2.4.0-1.fc37.noarch 209/285 Verifying : libwayland-client-1.21.0-1.fc37.x86_64 210/285 Verifying : libwayland-server-1.21.0-1.fc37.x86_64 211/285 Verifying : libwebp-1.3.0-1.fc38.x86_64 212/285 Verifying : libxcrypt-devel-4.4.33-5.fc38.x86_64 213/285 Verifying : libxkbcommon-1.5.0-1.fc38.x86_64 214/285 Verifying : libxkbcommon-x11-1.5.0-1.fc38.x86_64 215/285 Verifying : libxshmfence-1.3-11.fc37.x86_64 216/285 Verifying : lksctp-tools-1.0.19-2.fc37.x86_64 217/285 Verifying : lua-5.4.4-7.fc38.x86_64 218/285 Verifying : lua-filesystem-1.8.0-7.fc37.x86_64 219/285 Verifying : lua-json-1.3.4-2.fc37.noarch 220/285 Verifying : lua-lpeg-1.0.2-9.fc37.x86_64 221/285 Verifying : lua-posix-35.1-4.fc37.x86_64 222/285 Verifying : lua-term-0.07-16.fc37.x86_64 223/285 Verifying : make-1:4.4-1.fc38.x86_64 224/285 Verifying : mesa-libGLU-9.0.1-7.fc37.x86_64 225/285 Verifying : mesa-libGLU-devel-9.0.1-7.fc37.x86_64 226/285 Verifying : metis-5.1.0-33.fc37.x86_64 227/285 Verifying : mkfontscale-1.2.2-2.fc37.x86_64 228/285 Verifying : mockito-3.12.4-5.fc38.noarch 229/285 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 230/285 Verifying : mtdev-1.1.6-4.fc37.x86_64 231/285 Verifying : ncurses-c++-libs-6.4-2.20230114.fc38.x86_64 232/285 Verifying : ncurses-devel-6.4-2.20230114.fc38.x86_64 233/285 Verifying : nspr-4.35.0-3.fc38.x86_64 234/285 Verifying : nss-3.87.0-1.fc38.x86_64 235/285 Verifying : nss-softokn-3.87.0-1.fc38.x86_64 236/285 Verifying : nss-softokn-freebl-3.87.0-1.fc38.x86_64 237/285 Verifying : nss-sysinit-3.87.0-1.fc38.x86_64 238/285 Verifying : nss-util-3.87.0-1.fc38.x86_64 239/285 Verifying : objectweb-asm-9.3-4.fc38.noarch 240/285 Verifying : objenesis-3.3-1.fc38.noarch 241/285 Verifying : openblas-0.3.21-4.fc38.x86_64 242/285 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 243/285 Verifying : opentest4j-1.2.0-11.fc38.noarch 244/285 Verifying : pcre2-devel-10.42-1.fc38.x86_64 245/285 Verifying : pcre2-utf16-10.42-1.fc38.x86_64 246/285 Verifying : pcre2-utf32-10.42-1.fc38.x86_64 247/285 Verifying : pixman-0.40.0-6.fc37.x86_64 248/285 Verifying : procps-ng-3.3.17-8.fc38.x86_64 249/285 Verifying : python-rpm-macros-3.11-7.fc38.noarch 250/285 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 251/285 Verifying : python3-rpm-generators-14-1.fc38.noarch 252/285 Verifying : python3-rpm-macros-3.11-7.fc38.noarch 253/285 Verifying : python3-setuptools-65.5.1-1.fc38.noarch 254/285 Verifying : qt-1:4.8.7-70.fc38.x86_64 255/285 Verifying : qt-common-1:4.8.7-70.fc38.noarch 256/285 Verifying : qt-devel-1:4.8.7-70.fc38.x86_64 257/285 Verifying : qt-settings-37.0-1.fc38.noarch 258/285 Verifying : qt-x11-1:4.8.7-70.fc38.x86_64 259/285 Verifying : qt5-qtbase-5.15.8-2.fc38.x86_64 260/285 Verifying : qt5-qtbase-common-5.15.8-2.fc38.noarch 261/285 Verifying : qt5-qtbase-gui-5.15.8-2.fc38.x86_64 262/285 Verifying : rhash-1.4.3-1.fc38.x86_64 263/285 Verifying : scala-2.13.10-1.fc38.noarch 264/285 Verifying : scala-library-2.13.10-1.fc38.noarch 265/285 Verifying : scala-reflect-2.13.10-1.fc38.noarch 266/285 Verifying : scotch-6.1.2-3.fc37.x86_64 267/285 Verifying : suitesparse-5.13.0-1.fc38.x86_64 268/285 Verifying : sysprof-capture-devel-3.46.0-1.fc38.x86_64 269/285 Verifying : tcl-1:8.6.12-3.fc38.x86_64 270/285 Verifying : ttmkfdir-3.0.9-66.fc37.x86_64 271/285 Verifying : tzdata-java-2022g-1.fc38.noarch 272/285 Verifying : unixODBC-2.3.11-1.fc38.x86_64 273/285 Verifying : vim-filesystem-2:9.0.1221-1.fc38.noarch 274/285 Verifying : xcb-util-0.4.1-1.fc38.x86_64 275/285 Verifying : xcb-util-image-0.4.1-1.fc38.x86_64 276/285 Verifying : xcb-util-keysyms-0.4.1-1.fc38.x86_64 277/285 Verifying : xcb-util-renderutil-0.3.10-1.fc38.x86_64 278/285 Verifying : xcb-util-wm-0.4.2-1.fc38.x86_64 279/285 Verifying : xkeyboard-config-2.36-3.fc38.noarch 280/285 Verifying : xml-common-0.6.3-59.fc37.noarch 281/285 Verifying : xorg-x11-fonts-Type1-7.5-34.fc37.noarch 282/285 Verifying : xorg-x11-proto-devel-2022.2-2.fc38.noarch 283/285 Verifying : xz-devel-5.2.9-1.fc38.x86_64 284/285 Verifying : zlib-devel-1.2.13-2.fc38.x86_64 285/285 Installed: Lmod-8.7.18-1.fc38.x86_64 MUMPS-5.5.1-1.fc38.x86_64 MUMPS-common-5.5.1-1.fc38.noarch alsa-lib-1.2.8-2.fc38.x86_64 annobin-docs-11.06-2.fc38.noarch annobin-plugin-gcc-11.06-2.fc38.x86_64 avahi-libs-0.8-19.fc38.x86_64 boost-1.78.0-11.fc38.x86_64 boost-atomic-1.78.0-11.fc38.x86_64 boost-chrono-1.78.0-11.fc38.x86_64 boost-container-1.78.0-11.fc38.x86_64 boost-context-1.78.0-11.fc38.x86_64 boost-contract-1.78.0-11.fc38.x86_64 boost-coroutine-1.78.0-11.fc38.x86_64 boost-date-time-1.78.0-11.fc38.x86_64 boost-devel-1.78.0-11.fc38.x86_64 boost-fiber-1.78.0-11.fc38.x86_64 boost-filesystem-1.78.0-11.fc38.x86_64 boost-graph-1.78.0-11.fc38.x86_64 boost-iostreams-1.78.0-11.fc38.x86_64 boost-json-1.78.0-11.fc38.x86_64 boost-locale-1.78.0-11.fc38.x86_64 boost-log-1.78.0-11.fc38.x86_64 boost-math-1.78.0-11.fc38.x86_64 boost-nowide-1.78.0-11.fc38.x86_64 boost-numpy3-1.78.0-11.fc38.x86_64 boost-program-options-1.78.0-11.fc38.x86_64 boost-python3-1.78.0-11.fc38.x86_64 boost-random-1.78.0-11.fc38.x86_64 boost-regex-1.78.0-11.fc38.x86_64 boost-serialization-1.78.0-11.fc38.x86_64 boost-stacktrace-1.78.0-11.fc38.x86_64 boost-system-1.78.0-11.fc38.x86_64 boost-test-1.78.0-11.fc38.x86_64 boost-thread-1.78.0-11.fc38.x86_64 boost-timer-1.78.0-11.fc38.x86_64 boost-type_erasure-1.78.0-11.fc38.x86_64 boost-wave-1.78.0-11.fc38.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 byte-buddy-1.12.10-2.fc38.noarch byte-buddy-agent-1.12.10-2.fc38.noarch bzip2-devel-1.0.8-12.fc37.x86_64 cairo-1.17.6-2.fc37.x86_64 cliquer-libs-1.22-4.fc37.x86_64 cmake-3.25.2-1.fc38.x86_64 cmake-data-3.25.2-1.fc38.noarch cmake-filesystem-3.25.2-1.fc38.x86_64 cmake-rpm-macros-3.25.2-1.fc38.noarch coin-or-Cbc-2.10.5-10.fc37.x86_64 coin-or-Cgl-0.60.3-8.fc38.x86_64 coin-or-Clp-1.17.6-11.fc38.x86_64 coin-or-CoinUtils-2.11.4-8.fc38.x86_64 coin-or-Osi-0.108.6-6.fc37.x86_64 coin-or-lemon-1.3.1-25.fc37.x86_64 coin-or-lemon-devel-1.3.1-25.fc37.x86_64 copy-jdk-configs-4.1-1.fc38.noarch cpp-13.0.1-0.1.fc38.x86_64 crypto-policies-scripts-20221215-2.gita4c31a3.fc38.noarch cups-libs-1:2.4.2-5.fc38.x86_64 dbus-libs-1:1.14.4-1.fc38.x86_64 emacs-filesystem-1:28.2-1.fc38.noarch expat-2.5.0-1.fc38.x86_64 flexiblas-3.3.0-1.fc38.x86_64 flexiblas-netlib-3.3.0-1.fc38.x86_64 flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64 fontconfig-2.14.1-2.fc38.x86_64 fontconfig-devel-2.14.1-2.fc38.x86_64 fonts-filesystem-1:2.0.5-10.fc38.noarch freetype-2.12.1-3.fc37.x86_64 freetype-devel-2.12.1-3.fc37.x86_64 gc-8.2.2-1.fc38.x86_64 gcc-13.0.1-0.1.fc38.x86_64 gcc-c++-13.0.1-0.1.fc38.x86_64 gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64 gecode-6.2.0-10.fc37.x86_64 gettext-0.21.1-1.fc38.x86_64 gettext-envsubst-0.21.1-1.fc38.x86_64 gettext-libs-0.21.1-1.fc38.x86_64 gettext-runtime-0.21.1-1.fc38.x86_64 gl-manpages-1.1-25.20190306.fc37.noarch glib2-2.74.1-3.fc38.x86_64 glib2-devel-2.74.1-3.fc38.x86_64 glibc-devel-2.36.9000-23.fc38.x86_64 glibc-headers-x86-2.36.9000-23.fc38.noarch glpk-5.0-5.fc37.x86_64 glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_64 gnutls-3.7.8-11.fc38.x86_64 google-noto-fonts-common-20201206^1.git0c78c8329-9.fc38.noarch google-noto-sans-vf-fonts-20201206^1.git0c78c8329-9.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 gsl-2.7.1-3.fc38.x86_64 guile22-2.2.7-6.fc37.x86_64 harfbuzz-6.0.0-2.fc38.x86_64 harfbuzz-devel-6.0.0-2.fc38.x86_64 harfbuzz-icu-6.0.0-2.fc38.x86_64 hwdata-0.366-1.fc38.noarch jacop-4.8-9.fc37.noarch java-1.8.0-openjdk-1:1.8.0.352.b08-1.fc38.x86_64 java-1.8.0-openjdk-devel-1:1.8.0.352.b08-1.fc38.x86_64 java-1.8.0-openjdk-headless-1:1.8.0.352.b08-1.fc38.x86_64 java-17-openjdk-headless-1:17.0.6.0.9-0.2.ea.fc38.x86_64 java-diff-utils-4.12-1.fc37.noarch javapackages-filesystem-6.1.0-6.fc38.noarch javapackages-tools-6.1.0-6.fc38.noarch jbigkit-libs-2.1-24.fc37.x86_64 jline-builtins-3.22.0-1.fc38.noarch jline-reader-3.22.0-1.fc38.noarch jline-style-3.22.0-1.fc38.noarch jline-terminal-3.22.0-1.fc38.noarch jline-terminal-jna-3.22.0-1.fc38.noarch jna-5.13.0-1.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64 langpacks-core-font-en-3.0-27.fc38.noarch lcms2-2.14-1.fc38.x86_64 libICE-1.0.10-9.fc37.x86_64 libICE-devel-1.0.10-9.fc37.x86_64 libSM-1.2.3-11.fc37.x86_64 libSM-devel-1.2.3-11.fc37.x86_64 libX11-1.8.3-2.fc38.x86_64 libX11-common-1.8.3-2.fc38.noarch libX11-devel-1.8.3-2.fc38.x86_64 libX11-xcb-1.8.3-2.fc38.x86_64 libXau-1.0.11-1.fc38.x86_64 libXau-devel-1.0.11-1.fc38.x86_64 libXcomposite-0.4.5-8.fc37.x86_64 libXcursor-1.2.1-2.fc37.x86_64 libXcursor-devel-1.2.1-2.fc37.x86_64 libXext-1.3.5-1.fc38.x86_64 libXext-devel-1.3.5-1.fc38.x86_64 libXfixes-6.0.0-4.fc37.x86_64 libXfixes-devel-6.0.0-4.fc37.x86_64 libXft-2.3.6-1.fc38.x86_64 libXft-devel-2.3.6-1.fc38.x86_64 libXi-1.8-3.fc37.x86_64 libXi-devel-1.8-3.fc37.x86_64 libXinerama-1.1.5-1.fc38.x86_64 libXinerama-devel-1.1.5-1.fc38.x86_64 libXrandr-1.5.2-9.fc37.x86_64 libXrandr-devel-1.5.2-9.fc37.x86_64 libXrender-0.9.11-1.fc38.x86_64 libXrender-devel-0.9.11-1.fc38.x86_64 libXt-1.2.1-3.fc37.x86_64 libXt-devel-1.2.1-3.fc37.x86_64 libXtst-1.2.4-1.fc38.x86_64 libXv-1.0.11-17.fc37.x86_64 libXv-devel-1.0.11-17.fc37.x86_64 libXxf86vm-1.1.5-1.fc38.x86_64 libb2-0.98.1-7.fc37.x86_64 libblkid-devel-2.38.1-3.fc38.x86_64 libdrm-2.4.114-1.fc38.x86_64 libedit-3.1-44.20221030cvs.fc38.x86_64 libedit-devel-3.1-44.20221030cvs.fc38.x86_64 libevdev-1.13.0-2.fc38.x86_64 libffi-devel-3.4.4-1.fc38.x86_64 libfontenc-1.1.6-1.fc38.x86_64 libgfortran-13.0.1-0.1.fc38.x86_64 libglvnd-1:1.6.0-1.fc38.x86_64 libglvnd-core-devel-1:1.6.0-1.fc38.x86_64 libglvnd-devel-1:1.6.0-1.fc38.x86_64 libglvnd-egl-1:1.6.0-1.fc38.x86_64 libglvnd-gles-1:1.6.0-1.fc38.x86_64 libglvnd-glx-1:1.6.0-1.fc38.x86_64 libglvnd-opengl-1:1.6.0-1.fc38.x86_64 libgudev-237-3.fc37.x86_64 libicu-72.1-1.fc38.x86_64 libicu-devel-72.1-1.fc38.x86_64 libinput-1.22.1-2.fc38.x86_64 libjpeg-turbo-2.1.4-1.fc38.x86_64 libmng-2.0.3-16.fc37.x86_64 libmount-devel-2.38.1-3.fc38.x86_64 libmpc-1.3.1-1.fc38.x86_64 libnauty-2.8.6-1.fc38.x86_64 libpciaccess-0.16-7.fc37.x86_64 libpng-2:1.6.37-13.fc37.x86_64 libpng-devel-2:1.6.37-13.fc37.x86_64 libquadmath-13.0.1-0.1.fc38.x86_64 libquadmath-devel-13.0.1-0.1.fc38.x86_64 libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64 libsepol-devel-3.5-0.rc1.1.fc38.x86_64 libstdc++-devel-13.0.1-0.1.fc38.x86_64 libstdc++-static-13.0.1-0.1.fc38.x86_64 libtiff-4.4.0-4.fc37.x86_64 libtool-ltdl-2.4.7-5.fc38.x86_64 libuv-1:1.44.2-2.fc37.x86_64 libwacom-2.4.0-1.fc37.x86_64 libwacom-data-2.4.0-1.fc37.noarch libwayland-client-1.21.0-1.fc37.x86_64 libwayland-server-1.21.0-1.fc37.x86_64 libwebp-1.3.0-1.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.33-5.fc38.x86_64 libxkbcommon-1.5.0-1.fc38.x86_64 libxkbcommon-x11-1.5.0-1.fc38.x86_64 libxml2-devel-2.10.3-3.fc38.x86_64 libxshmfence-1.3-11.fc37.x86_64 lksctp-tools-1.0.19-2.fc37.x86_64 llvm-15.0.7-2.fc38.x86_64 llvm-devel-15.0.7-2.fc38.x86_64 llvm-libs-15.0.7-2.fc38.x86_64 llvm-static-15.0.7-2.fc38.x86_64 llvm-test-15.0.7-2.fc38.x86_64 lua-5.4.4-7.fc38.x86_64 lua-filesystem-1.8.0-7.fc37.x86_64 lua-json-1.3.4-2.fc37.noarch lua-lpeg-1.0.2-9.fc37.x86_64 lua-posix-35.1-4.fc37.x86_64 lua-term-0.07-16.fc37.x86_64 make-1:4.4-1.fc38.x86_64 mesa-libEGL-22.3.3-2.fc38.x86_64 mesa-libGL-22.3.3-2.fc38.x86_64 mesa-libGLU-9.0.1-7.fc37.x86_64 mesa-libGLU-devel-9.0.1-7.fc37.x86_64 mesa-libgbm-22.3.3-2.fc38.x86_64 mesa-libglapi-22.3.3-2.fc38.x86_64 metis-5.1.0-33.fc37.x86_64 mkfontscale-1.2.2-2.fc37.x86_64 mockito-3.12.4-5.fc38.noarch mp-3.1.0-41.20200303git7fd4828.fc38.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mtdev-1.1.6-4.fc37.x86_64 ncurses-c++-libs-6.4-2.20230114.fc38.x86_64 ncurses-devel-6.4-2.20230114.fc38.x86_64 nspr-4.35.0-3.fc38.x86_64 nss-3.87.0-1.fc38.x86_64 nss-softokn-3.87.0-1.fc38.x86_64 nss-softokn-freebl-3.87.0-1.fc38.x86_64 nss-sysinit-3.87.0-1.fc38.x86_64 nss-util-3.87.0-1.fc38.x86_64 objectweb-asm-9.3-4.fc38.noarch objenesis-3.3-1.fc38.noarch openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 opentest4j-1.2.0-11.fc38.noarch pcre2-devel-10.42-1.fc38.x86_64 pcre2-utf16-10.42-1.fc38.x86_64 pcre2-utf32-10.42-1.fc38.x86_64 pixman-0.40.0-6.fc37.x86_64 procps-ng-3.3.17-8.fc38.x86_64 pyproject-rpm-macros-1.5.1-2.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-rpm-macros-3.11-7.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-3.fc38.x86_64 python3-devel-3.11.1-3.fc38.x86_64 python3-libs-3.11.1-3.fc38.x86_64 python3-numpy-1:1.23.5-2.fc38.x86_64 python3-packaging-23.0-1.fc38.noarch python3-rpm-generators-14-1.fc38.noarch python3-rpm-macros-3.11-7.fc38.noarch python3-setuptools-65.5.1-1.fc38.noarch qt-1:4.8.7-70.fc38.x86_64 qt-common-1:4.8.7-70.fc38.noarch qt-devel-1:4.8.7-70.fc38.x86_64 qt-settings-37.0-1.fc38.noarch qt-x11-1:4.8.7-70.fc38.x86_64 qt5-qtbase-5.15.8-2.fc38.x86_64 qt5-qtbase-common-5.15.8-2.fc38.noarch qt5-qtbase-gui-5.15.8-2.fc38.x86_64 rhash-1.4.3-1.fc38.x86_64 scala-2.13.10-1.fc38.noarch scala-library-2.13.10-1.fc38.noarch scala-reflect-2.13.10-1.fc38.noarch scotch-6.1.2-3.fc37.x86_64 suitesparse-5.13.0-1.fc38.x86_64 sysprof-capture-devel-3.46.0-1.fc38.x86_64 tcl-1:8.6.12-3.fc38.x86_64 ttmkfdir-3.0.9-66.fc37.x86_64 tzdata-java-2022g-1.fc38.noarch unixODBC-2.3.11-1.fc38.x86_64 vim-filesystem-2:9.0.1221-1.fc38.noarch xcb-util-0.4.1-1.fc38.x86_64 xcb-util-image-0.4.1-1.fc38.x86_64 xcb-util-keysyms-0.4.1-1.fc38.x86_64 xcb-util-renderutil-0.3.10-1.fc38.x86_64 xcb-util-wm-0.4.2-1.fc38.x86_64 xkeyboard-config-2.36-3.fc38.noarch xml-common-0.6.3-59.fc37.noarch xorg-x11-fonts-Type1-7.5-34.fc37.noarch xorg-x11-proto-devel-2022.2-2.fc38.noarch xz-devel-5.2.9-1.fc38.x86_64 zlib-devel-1.2.13-2.fc38.x86_64 Complete! Finish: build setup for seqan-1.4.2-51.fc38.src.rpm Start: rpmbuild seqan-1.4.2-51.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1673913600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0pAfVe + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqan-1.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seqan-1.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (seqan-docpath.patch):' Patch #0 (seqan-docpath.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file util/cmake/SeqAnBuildSystem.cmake + echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):' Patch #1 (seqan-exclude_splazers_fiona_tests.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file core/apps/splazers/CMakeLists.txt patching file core/apps/fiona/CMakeLists.txt + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';' + cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt + cp -p core/apps/rabema/LICENSE GPLv3+.txt + cp -p LICENSE BSD.txt + cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.8uaEOF + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seqan-1.4.2 + mkdir -p build/Release + pushd build/Release ~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2 + SEQAN_OPT_FLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC' + export 'CXXFLAGS=-std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon' + CXXFLAGS='-std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fPIC' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fPIC' + cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../.. -- The C compiler identification is GNU 13.0.1 -- The CXX compiler identification is GNU 13.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Initializing SeqAn Build System... -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring core CMake Deprecation Warning at core/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at core/apps/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps CMake Deprecation Warning at core/apps/dfi/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/dfi -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Determined version is 1.4.2 -- Found PythonInterp: /usr/bin/python3 (found version "3.11.1") CMake Deprecation Warning at core/apps/fiona/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/fiona -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found version "1.78.0") CMake Deprecation Warning at core/apps/mason/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/mason CMake Deprecation Warning at core/apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/micro_razers CMake Deprecation Warning at core/apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/pair_align CMake Deprecation Warning at core/apps/rabema/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/rabema CMake Deprecation Warning at core/apps/razers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/razers CMake Deprecation Warning at core/apps/razers2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/razers2 CMake Deprecation Warning at core/apps/sak/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/sak CMake Deprecation Warning at core/apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/sam2matrix CMake Deprecation Warning at core/apps/samcat/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/samcat CMake Deprecation Warning at core/apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/seqan_tcoffee CMake Deprecation Warning at core/apps/seqcons/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/seqcons CMake Deprecation Warning at core/apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/snp_store CMake Deprecation Warning at core/apps/splazers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/splazers CMake Deprecation Warning at core/apps/stellar/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/stellar CMake Deprecation Warning at core/apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/tree_recon -- Configuring extras CMake Deprecation Warning at extras/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at extras/apps/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps CMake Deprecation Warning at extras/apps/alf/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/alf CMake Deprecation Warning at extras/apps/breakpoint_calculator/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/breakpoint_calculator CMake Deprecation Warning at extras/apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/bs_tools CMake Deprecation Warning at extras/apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/fx_tools CMake Deprecation Warning at extras/apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/gustaf CMake Deprecation Warning at extras/apps/insegt/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/insegt CMake Deprecation Warning at extras/apps/mason2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/mason2 CMake Deprecation Warning at extras/apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring sandbox/jagla/apps/ngs_roi CMake Deprecation Warning at extras/apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/param_chooser CMake Deprecation Warning at extras/apps/razers3/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/razers3 -- Performing Test CXX11_FOUND -- Performing Test CXX11_FOUND - Success -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - found CMake Deprecation Warning at extras/apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/rep_sep CMake Deprecation Warning at extras/apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/searchjoin CMake Deprecation Warning at extras/apps/seqan_flexbar/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/seqan_flexbar CMake Deprecation Warning at extras/apps/sgip/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/sgip CMake Deprecation Warning at extras/apps/variant_comp/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/variant_comp -- Configuring docs CMake Deprecation Warning at docs/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring manual CMake Deprecation Warning at manual/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) -- Sphinx not found, not building sphinx manual as a test. -- Configuring sandbox CMake Deprecation Warning at sandbox/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring util/py_lib -- Python nosetests ('import nose' failed), cannot add tests for seqan.dox -- Found Java: /usr/bin/java (found version "17.0.6") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_SKIP_INSTALL_RPATH SEQAN_APP_VERSION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release + make -j1 all /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:274:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 274 | struct LessSubstringEnd : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:298:27: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 298 | struct LessRange : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:315:25: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 315 | struct LessLex : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 845 | switch (options.alphabet) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:17: note: here 851 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 852 | switch (options.alphabet) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:17: note: here 858 | case 2: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 1%] Linking CXX executable ../../../bin/dfi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Built target dfi make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Stats; TValueTarget = Stats]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Stats; TValueTarget = Stats]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:843:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 97 | struct Stats | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 97 | struct Stats | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'Stats::Stats(const Stats&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> > >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> > >; TValue = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(StringSet&, StringSet&, RecordReader >&, const TTag&) [with TIdString = String >; TIdSpec = Owner<>; TSeqString = String, Alloc<> >; TSeqSpec = Owner<>; TFile = std::basic_fstream; TSpec = void; TTag = Tag; typename EnableIf::Type, Tag >::Type, typename IsSameType::Type, Tag >::Type>::Type, int>::Type = int; typename Or::Type, Tag >::Type, typename IsSameType::Type, Tag >::Type>::Type = True; typename IsSameType::Type, Tag >::Type = True; typename RemoveConst_::Type = Tag; typename IsSameType::Type, Tag >::Type = False]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 3%] Linking CXX executable ../../../bin/compute_gain cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Built target compute_gain make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1687 | struct LessOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1705 | struct LessPositionOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4212 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4215 | Dna5String tmp; | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4235 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4238 | double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4413 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4416 | if (options.errorrate != 0 && options.wovsum != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4461 | if (options.verbosity >= 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 4463 | SEQAN_PROTIMESTART(search); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4684 | for (unsigned i = 0; i < length(store.readSeqStore); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4689 | TFionaQgramIndex qgramIndex(prefixes); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4852 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4854 | if (inTerm && options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5027 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5032 | resize(store.readSeqStore, readCount); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5479 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5483 | bool autoCycles = (options.cycles == 0 || options.cycles == 1000); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5486 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 5489 | SEQAN_PROTIMESTART(correction); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5495 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5497 | if (!loadReadsNoNames(store, options.inputFilename, options)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5561 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5563 | options.autolevel = (options.fromLevel <= 1); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5671 | if (res != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5674 | if (options.verbosity >= 1 && options.cycles > 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag) [with TSA = String >, Alloc<> >; TString = Segment, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<10> >; TDir = String >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 445 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 472 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16: required from 'typename seqan::Suffix::Type seqan::suffix(StringSet&, const TPosition&) [with TString = String, Alloc<> >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = long unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 350 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 4%] Linking CXX executable ../../../bin/fiona cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Built target fiona make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1687 | struct LessOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1705 | struct LessPositionOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4212 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4215 | Dna5String tmp; | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4235 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4238 | double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4413 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4416 | if (options.errorrate != 0 && options.wovsum != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4461 | if (options.verbosity >= 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 4463 | SEQAN_PROTIMESTART(search); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4684 | for (unsigned i = 0; i < length(store.readSeqStore); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4689 | TFionaQgramIndex qgramIndex(prefixes); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4852 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4854 | if (inTerm && options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5027 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5032 | resize(store.readSeqStore, readCount); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5479 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5483 | bool autoCycles = (options.cycles == 0 || options.cycles == 1000); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5486 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 5489 | SEQAN_PROTIMESTART(correction); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5495 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5497 | if (!loadReadsNoNames(store, options.inputFilename, options)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5561 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5563 | options.autolevel = (options.fromLevel <= 1); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5671 | if (res != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5674 | if (options.verbosity >= 1 && options.cycles > 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag) [with TSA = String >, Alloc<> >; TString = Segment, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<10> >; TDir = String >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 445 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 472 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16: required from 'typename seqan::Suffix::Type seqan::suffix(StringSet&, const TPosition&) [with TString = String, Alloc<> >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = long unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 350 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 6%] Linking CXX executable ../../../bin/fiona_illumina cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Built target fiona_illumina make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o -MF CMakeFiles/mason.dir/mason.cpp.o.d -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = True]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1565:36: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = String, Alloc<> >; TSize = long unsigned int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12: required from 'int writeRandomSequence(TRNG&, size_t, const seqan::CharString&, const TOptions&) [with TRNG = seqan::Rng; TOptions = Options >; size_t = long unsigned int; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11: required from 'void seqan::insert(String >&, TPos, const TString&) [with TValue = SimpleType; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String >; TPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = String, Alloc<> >; TSize = unsigned int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12: required from 'void buildHaplotype(seqan::StringSet, seqan::Journaled > > >&, seqan::FragmentStore&, seqan::String >&, TRNG&, const Options&) [with TRNG = seqan::Rng]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11: required from 'void seqan::insert(String >&, TPos, const TString&) [with TValue = SimpleType; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String >; TPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tempbuf.h:59, from /usr/include/c++/13/bits/stl_algo.h:69, from /usr/include/c++/13/algorithm:61, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551408' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 8%] Linking CXX executable ../../../bin/mason cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Built target mason make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:25: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:662:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 662 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:691:49: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 691 | struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:747:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 747 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:779:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 779 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, UngappedShape<0> >; TDir = String >; TValue = unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, UngappedShape<0> >; TDir = String >; TValue = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1378:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1378 | return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note: initializing argument 2 of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const RazerSOptions&, MicroRNA) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TSpec = RazerSSpec<>]' 1276 | Segment inf, // potential match genome region | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, OneGappedShape>; TDir = String >; TValue = unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, OneGappedShape>; TDir = String >; TValue = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, GappedShape > >; TDir = String >; TValue = unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, GappedShape > >; TDir = String >; TValue = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1490 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1491:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1474:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1492:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1497:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ [ 9%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp [ 9%] Linking CXX executable ../../../bin/micro_razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 9%] Built target micro_razers make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment, Alloc<> >, Dependent > >, void, const Tag >; TNames = StringSet > >; FastaFormat = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment, Alloc<> >, Dependent > >, void, const Tag >; TNames = StringSet > >; FastaFormat = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment, Alloc<> >, Dependent > >, void, const Tag >; TNames = StringSet > >; FastaFormat = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >; TValue = String >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 11%] Linking CXX executable ../../../bin/pair_align cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target pair_align make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16: required from 'seqan::String >::String(seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 12%] Linking CXX executable ../../../bin/rabema_prepare_sam cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Built target rabema_prepare_sam make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 624 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 14%] Linking CXX executable ../../../bin/rabema_build_gold_standard cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Built target rabema_build_gold_standard make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, String&) [with TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:635:22: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1827 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1838 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1859 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 624 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'seqan::IntervalTree::IntervalTree(const seqan::IntervalTree&)' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::IntervalTree*; TParam = seqan::IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = IntervalTree*; TParam = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = IntervalTree*; TSource1 = IntervalTree*; TSource2 = IntervalTree*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'seqan::IntervalTree::IntervalTree(const seqan::IntervalTree&)' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::IntervalTree*; TParam = seqan::IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = IntervalTree*; TParam = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = IntervalTree*; TSource1 = IntervalTree*; TSource2 = IntervalTree*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 16%] Linking CXX executable ../../../bin/rabema_evaluate cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_evaluate make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:3: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:13: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 624 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 16%] Linking CXX executable ../../../bin/rabema_do_search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_do_search make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:715:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 715 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:747:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 747 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:779:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 779 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:55: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:237:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 237 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 548 | else if (endsWith(tmp, ".gff")) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 551 | if (isSet(parser, "shape")) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 585 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 587 | if ((options.minClippedLen < 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1490 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1490 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1491:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1474:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1492:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42: required from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15: required from 'seqan::String >& seqan::String >::operator=(const TSource&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1497:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ [ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp [ 19%] Linking CXX executable ../../../bin/razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Built target razers make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o -MF CMakeFiles/razers2.dir/razers.cpp.o.d -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:488:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 488 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:535:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:583:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 583 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:630:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 630 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:127:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 127 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:169:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 169 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:51: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:228:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 228 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 492 | if (!isSet(parser, "read-naming") && options.outputFormat == 4) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 495 | if (isSet(parser, "shape")) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 529 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 532 | options.errorRate = (100.0 - options.errorRate) / 100.0; | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, Myers > >, Pattern >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, Myers > >, Pattern >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, Myers > >, Pattern >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Triple, void>, AlignQualityStoreElement, void>; TSource = Triple, void>, AlignQualityStoreElement, void>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_dequeue.h:344:8: required from 'void seqan::pushBack(Dequeue&, const TValue&) [with TValue = Triple, void>, AlignQualityStoreElement, void>; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>& seqan::Triple, void>, seqan::AlignQualityStoreElement, void>::operator=(const seqan::Triple, void>, seqan::AlignQualityStoreElement, void>&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement, void>; T3 = seqan::AlignQualityStoreElement; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1049:21: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = void; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = False]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1053:48: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1015:13: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1069:22: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1073:16: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Segment >, InfixSegment>*; TSource1 = Segment >, InfixSegment>*; TSource2 = Segment >, InfixSegment>*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Segment >, InfixSegment>; TValueTarget = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Segment >, InfixSegment>; TValueTarget = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Segment >, InfixSegment>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:1435:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Segment >, InfixSegment>; TSpec = Owner<>; TSize = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:731:8: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple, void>, AlignQualityStoreElement, void>; TSource = Triple, void>, AlignQualityStoreElement, void>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple, void>, AlignQualityStoreElement, void>; TSource = Triple, void>, AlignQualityStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple, void>, AlignQualityStoreElement, void>*; TSource1 = Triple, void>, AlignQualityStoreElement, void>*; TSource2 = Triple, void>, AlignQualityStoreElement, void>*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple, void>, AlignQualityStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple, void>, AlignQualityStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple, void>, AlignQualityStoreElement, void>*; TSource1 = Triple, void>, AlignQualityStoreElement, void>*; TSource2 = Triple, void>, AlignQualityStoreElement, void>*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>& seqan::Triple, void>, seqan::AlignQualityStoreElement, void>::operator=(const seqan::Triple, void>, seqan::AlignQualityStoreElement, void>&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement, void>; T3 = seqan::AlignQualityStoreElement; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o -MF CMakeFiles/razers2.dir/param_tabs.cpp.o.d -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp [ 20%] Linking CXX executable ../../../bin/razers2 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2 -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 20%] Built target razers2 make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 22%] Linking CXX executable ../../../bin/sak cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Built target sak make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38: required from 'int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String >; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/x86_64-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 24%] Linking CXX executable ../../../bin/sam2matrix cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Built target sam2matrix make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 25%] Linking CXX executable ../../../bin/samcat cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target samcat make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = long unsigned int; TCargo = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, long unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = long unsigned int; typename Value::Type = Fragment<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, long unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:229:17: required from 'void seqan::buildAlignmentGraph(String&, Graph >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; FrequencyCounting = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:115:21: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2068 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2079 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2100 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 25%] Linking CXX executable ../../../bin/seqan_tcoffee cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target seqan_tcoffee make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o -MF CMakeFiles/seqcons.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 94 | if (res != seqan::ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 98 | getOptionValue(consOpt.readsfile, parser, "reads"); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 240 | if (res != seqan::ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 244 | typedef FragmentStore<> TFragmentStore; | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = long unsigned int; TCargo = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph >, Dependent > >, long unsigned int, Tag > >; TSequence = String >; TSetSpec = Dependent >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = long unsigned int; typename Value::Type = Fragment<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph >, Dependent > >, long unsigned int, Tag > >; TSequence = String >; TSetSpec = Dependent >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:182:17: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; FractionalScore = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:311:21: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:564:21: required from 'void seqan::consensusAlignment(Graph >&, String >&, const TConfigOptions&) [with TStringSet = StringSet >, Dependent > >; TCargo = void; TSpec = const Tag; TSize = long unsigned int; TConfigOptions = ConsensusOptions]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:278:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2068 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2079 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2100 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15: required from 'void seqan::reAlign(FragmentStore&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TScore = Score >, Score > > >; TId = long unsigned int; TMethod = int; TBandwidth = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:12: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14: required from 'int seqan::_convertSimpleReadFile(TFile&, FragmentStore&, TFilePath&, bool) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TFilePath = const std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14: required from 'int seqan::_convertSimpleReadFile(TFile&, FragmentStore&, TFilePath&, bool) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TFilePath = const std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 564 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here 565 | case 'D': | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19, inlined from 'void seqan::upgmaTree(Graph >&, Graph >&, TTag) [with TValue = double; TSpec1 = Tag; TCargo = double; TSpec2 = Tag; TTag = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:854:9: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::upgmaTree(Graph >&, Graph >&, TTag) [with TValue = double; TSpec1 = Tag; TCargo = double; TSpec2 = Tag; TTag = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:227:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:227:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 27%] Linking CXX executable ../../../bin/seqcons cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Built target seqcons make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:53: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:356:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 356 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:405:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 405 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:420:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 420 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:468:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 468 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:481:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 481 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:504:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 504 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:523:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 523 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:545:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 545 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment >, seqan::InfixSegment>; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:5235:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TGenome = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:997:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h:143:53: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 143 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4144:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1200:28: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1178:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:450:22: required from 'bool seqan::isGap(const Gaps >&, TPosition) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4505:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12: required from 'int seqan::readNChars(TBuffer&, RecordReader&, unsigned int) [with TBuffer = String >; TStream = std::basic_fstream; TPass = SinglePass]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39: required from 'int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String >&, StringSet&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream*; TFragmentStore = FragmentStore; TReadCounts = String >; TCigarStr = String >; TGenome = String >; TGenomeIdMap = std::map >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28: required from 'void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 29%] Linking CXX executable ../../../bin/snp_store cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target snp_store make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:712:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 712 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:740:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 740 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:766:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 766 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:784:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:806:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:51: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 198 | if (skipWhitespaces(reader) != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 201 | int kickout = 0; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 373 | if (pm_options.verbose) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 376 | resize(avg,pm_options.totalN,(TFloat)0.0); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 934 | if (value(reader) == 'e') | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 938 | bool atLeastOneFound = false; | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:59: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:525:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 564 | for (unsigned i = 0; i < length(readFileNames); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 567 | if(length(readFileNames) == 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 615 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 617 | if ((options.minClippedLen < 0) && (stop = true)) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 161 | _host(std::forward(host)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 165 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 684 | TGenomeInfix oriInf = inf; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 692 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2618:20: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 684 | TGenomeInfix oriInf = inf; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 692 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1466 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2036:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2183:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1466 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(const Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:537:26: required from 'void seqan::setHost(ModifiedString&, const THost&) [with THost = Segment >, InfixSegment>; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:696:10: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:477:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 477 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3101:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3103:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2256:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2259:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >; TString = char [1]; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ofstream; THost = ModifiedString >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder >, InfixSegment>, Swift > > >; typename Parameter_::Type>::Type = Segment >, InfixSegment>; typename Haystack::Type = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25: required from 'seqan::Pair > >::Type> seqan::positionRange(Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 801 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder >, InfixSegment>, Swift > > >; typename Parameter_::Type>::Type = Segment >, InfixSegment>; typename Haystack::Type = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25: required from 'seqan::Pair > >::Type> seqan::positionRange(Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 801 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2410:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:670:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:693:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:1735:14: required from 'bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions&, char, SwiftSemiGlobal) [with TMatch = ReadMatch; TRead = const Segment >, InfixSegment>; TGenome = String >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1450:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1468:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42: required from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15: required from 'seqan::String >& seqan::String >::operator=(const TSource&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:704:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1473:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:185:61: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >; TString = char [1]; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ofstream; THost = ModifiedString >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:626:22: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(ModifiedString&, Tag) [with THost = const Segment >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:497:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = ModifiedString >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:186:63: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >; TString = char [1]; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ofstream; THost = ModifiedString >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 29%] Linking CXX executable ../../../bin/splazers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target splazers make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:30: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:154:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:206:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:125:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 125 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Dependent >; TShape = Shape >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Dependent >; TShape = Shape >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String >; TSpec1 = Tag; TSource2 = Segment >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Dependent > >, IndexQGram, Tag > >; TSource = Index >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String >; TSpec1 = Tag; TSource2 = Segment >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String >; TSize = int; TEps = double; TAlign = seqan::Align >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>, InfixSegment>*; TParam = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>, InfixSegment>; typename Value::Type = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>, InfixSegment>; TValue2 = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = ScoreAndID; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 30%] Linking CXX executable ../../../bin/stellar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Built target stellar make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37, from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 139 | if (res != seqan::ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 143 | typedef double TDistanceValue; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 165 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 169 | String names; | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 32%] Linking CXX executable ../../../bin/tree_recon cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target tree_recon make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target seqan_extras make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11: required from 'seqan::String& seqan::operator+=(String&, const TRight&) [with TLeftValue = SimpleType; TLeftSpec = Alloc<>; TRight = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = unsigned int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9: required from 'void seqan::unhash(TString&, THash, unsigned int) [with TString = String, Alloc<> >; THash = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> > >, IndexQGram > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15: required from 'void seqan::MarkovModel::build(const seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10: required from 'void seqan::buildMarkovModel(MarkovModel&, StringSet >&) [with TAlphabet = SimpleType; TFloat = double; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21: required from 'void seqan::countKmers(String >&, MarkovModel&, const TString&, unsigned int) [with TString = String, Alloc<> >; TAlphabetBG = SimpleType; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TStringSet = StringSet, Alloc<> > >; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> > >, IndexQGram > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15: required from 'void seqan::MarkovModel::build(const seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10: required from 'void seqan::buildMarkovModel(MarkovModel&, StringSet >&) [with TAlphabet = SimpleType; TFloat = double; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21: required from 'void seqan::countKmers(String >&, MarkovModel&, const TString&, unsigned int) [with TString = String, Alloc<> >; TAlphabetBG = SimpleType; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TStringSet = StringSet, Alloc<> > >; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11: required from 'seqan::String& seqan::operator+=(String&, const TRight&) [with TLeftValue = SimpleType; TLeftSpec = Alloc<>; TRight = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15: required from 'void seqan::calculateCovariance(TValue&, const String&, const String&, MarkovModel&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48: required from 'void seqan::_standardiseCounts(TString&, const String >&, const StringSet > >&, const TSequence&, const AFScore >&) [with TString = String; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15: required from 'void seqan::calculateCovariance(TValue&, const String&, const String&, MarkovModel&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48: required from 'void seqan::_standardiseCounts(TString&, const String >&, const StringSet > >&, const TSequence&, const AFScore >&) [with TString = String; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 32%] Linking CXX executable ../../../bin/alf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target alf make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -MF CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o.d -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 32%] Linking CXX executable ../../../bin/breakpoint_calculator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target breakpoint_calculator make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:46: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h:28:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 28 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20: required from 'int writeBsAlignment(TStream&, const seqan::BamIOContext&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TFragmentStore = seqan::FragmentStore; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 33%] Linking CXX executable ../../../bin/bisar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Built target bisar make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:42:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 42 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:17:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 17 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:66:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 66 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:81:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 81 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:129:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 129 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:142:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 142 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:165:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 165 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:184:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 184 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:206:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1387:36: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const Gaps&, const TIDString&, Raw) [with TFile = std::basic_ostream; TSource = String >; TIDString = char [1]; TSpec = AnchorGaps, Alloc<> > >; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const Gaps&, const TIDString&, Raw) [with TFile = std::basic_ostream; TSource = String >; TIDString = char [1]; TSpec = AnchorGaps, Alloc<> > >; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:343:54: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const Gaps&, const TIDString&, Raw) [with TFile = std::basic_ostream; TSource = String >; TIDString = char [1]; TSpec = AnchorGaps, Alloc<> > >; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15: required from 'int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader, seqan::SinglePass >; TNameStore = seqan::StringSet > >; TFragmentStore = seqan::FragmentStore; TContigId = int; TContigPos = long int; TOptions = SNPCallingOptions; typename seqan::Value::Type = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps >, AnchorGaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 564 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here 565 | case 'D': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 190 | me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here 191 | case -1: // Ref gap | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 190 | me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here 191 | case -1: // Ref gap | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 265 | me.targetFreqs[i][3] += (1.0/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here 266 | case -1: // Ref gap | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 265 | me.targetFreqs[i][3] += (1.0/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here 266 | case -1: // Ref gap | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 35%] Linking CXX executable ../../../bin/casbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Built target casbar make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:40: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:14:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 14 | struct ConvertCT : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:23:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 23 | struct ConvertGA : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:36: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 37%] Linking CXX executable ../../../bin/four2three cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target four2three make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 38%] Linking CXX executable ../../../bin/fx_bam_coverage cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_bam_coverage make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, TQualString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TQualString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TQualities = seqan::String >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:38: required from 'int seqan::readRecord(TId&, TSequence&, TQualities&, SequenceStream&) [with TId = String >; TSequence = String, Alloc<> >; TQualities = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/x86_64-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 38%] Linking CXX executable ../../../bin/fx_fastq_stats cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_fastq_stats make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:30: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:154:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:206:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15: required from 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, TValue, String&) [with TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:240:18: required from 'bool _checkRightMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:278:42: required from 'bool _checkMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:345:35: required from 'void _initialiseGraphMatePairs(QueryMatches >&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_algorithms.h:644:42: required from 'void _chainQueryMatches(seqan::StringSet > >&, seqan::String&, seqan::String&, const seqan::StringSet >&, seqan::StringSet >&, seqan::String >&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TScoreAlloc = seqan::String; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:224:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1949 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1961 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1982 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8: required from 'bool _writeGlobalBreakpoints(const seqan::String&, seqan::StringSet >&, seqan::StringSet&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::Vcf = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:401:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1929:12: required from 'void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, const TSource&) [with TTarget = String, Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:224:20: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = ScoreAndID; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = ScoreAndID; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8, inlined from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:39, inlined from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:109:35, inlined from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:121:30, inlined from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:617:30, inlined from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In copy constructor 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In copy constructor 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 40%] Linking CXX executable ../../../bin/gustaf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Built target gustaf make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:16: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function 'void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, FragmentStore&, TMap&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 225 | if (getValue(itAnno).typeId != INVALID_ID) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 228 | if (getValue(itAnno).contigId == INVALID_ID ) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function 'bool seqan::ngsOverlapper(TOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 901 | if (!readOutput.good()) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 903 | createReadCountGFF(readOutput, readAnnoStore, fragStore); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 908 | if (!annoOutput.good()) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 910 | createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 915 | if (!tupleOutput.good()) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 917 | createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 188 | if (res != ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 191 | if (options.maxTuple) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const Iter >&) [with TFragmentStore = FragmentStore<>; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:45:64: required from 'void seqan::adjustParentEntries(FragmentStore&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:865:21: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1281:54: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 1281 | Iter > tmp(it); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 415 | operator = (Iter const &_origin) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1283:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 1283 | return tmp; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 415 | operator = (Iter const &_origin) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_intervaltree.h:182:15: required from 'void seqan::findIntervalsForInterval(String&, TIntervalTree&, TInterval&, const unsigned int&) [with TIntervalTree = IntervalTree; TInterval = Interval; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:82:27: required from 'void seqan::getIdsForRead(TAnnoIds&, FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TIntervalTree = IntervalTree; TIntervals = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/fusion.h:775:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:884:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1827 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1838 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1859 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >, GapAnchor, void>, Alloc<> >; TValue = ContigStoreElement >, GapAnchor, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14: required from 'void seqan::_storeAppendContig(FragmentStore&, TId&, TName&) [with TSpec = void; TConfig = FragmentStoreConfig; TId = unsigned int; TName = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23: required from 'void seqan::_storeOneAnnotation(TFragmentStore&, IOContextGff_&) [with TFragmentStore = FragmentStore<>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32: required from 'void seqan::read(TFile&, FragmentStore&, Gff) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Gff = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30: required from 'void seqan::_readAlignments(TStreamOrReader&, BamIOContext&, FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > >, String > >; TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet, Alloc<> >, Owner > >; TMatchMateInfos = String, Alloc<> >; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30: required from 'void seqan::_readAlignments(TStreamOrReader&, BamIOContext&, FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > >, String > >; TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet, Alloc<> >, Owner > >; TMatchMateInfos = String, Alloc<> >; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 564 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here 565 | case 'D': | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 41%] Linking CXX executable ../../../bin/insegt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Built target insegt make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, String&) [with TValue = int; TCargo = GenomicInterval]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:644:18: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1827 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1838 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1859 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >; TValue = String >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, inlined from 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:377:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In member function 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, inlined from 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:382:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = char; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = char]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 161 | _host(std::forward(host)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 165 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In function 'std::pair appendOperation(TCigarString&, char)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 161 | _host(std::forward(host)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 165 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In function 'std::pair appendOperation(TCigarString&, char)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 50%] Linking CXX static library libmason_sim.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_sim make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../../../bin/mason_genome cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_genome make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../../../bin/mason_methylation cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_methylation make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38: required from 'int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String >; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 53%] Linking CXX executable ../../../bin/mason_frag_sequencing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Built target mason_frag_sequencing make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = StructuralVariantRecord; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = StructuralVariantRecord; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const seqan::CharString&)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:317:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551504' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const seqan::CharString&)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 54%] Linking CXX executable ../../../bin/mason_variator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Built target mason_variator make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function 'int MasonMaterializerApp::run()': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=] 110 | catch (MasonIOException e) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../../../bin/mason_materializer cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Built target mason_materializer make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:243:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:153:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:221:57: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:40: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/x86_64-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/vector:63: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 58%] Linking CXX executable ../../../bin/mason_simulator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Built target mason_simulator make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function 'int MasonSplicingApp::run()': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=] 138 | catch (MasonIOException e) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 59%] Linking CXX executable ../../../bin/mason_splicing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Built target mason_splicing make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'std::pair appendOperation(TCigarString&, char)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 61%] Linking CXX executable ../../../bin/mason_tests cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target mason_tests make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 61%] Linking CXX executable ../../../bin/roi_plot_thumbnails cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target roi_plot_thumbnails make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 64%] Linking CXX executable ../../../bin/bam2roi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Built target bam2roi make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:43: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 67%] Linking CXX executable ../../../bin/roi_feature_projection cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Built target roi_feature_projection make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:64, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h: In function 'void seqan::pms1(TStrings&, TStrings&, const TType&, const TType&, const bool&, const Oops&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h:264:82: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 264 | std::count_if(vect_iter, upper_iter, std::bind2nd(std::equal_to(), *vect_iter)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:66: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h: In function 'void seqan::_filteringStep(TBucketAr&, TArray&, TType&, TStrings&, TPositions&, const TType&, const TType&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h:627:50: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater_equal; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 627 | bind2nd(std::greater_equal(),static_cast(s))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 712 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 740 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 766 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 198 | if (skipWhitespaces(reader) != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 201 | int kickout = 0; | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 373 | if (pm_options.verbose) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 376 | resize(avg,pm_options.totalN,(TFloat)0.0); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 934 | if (value(reader) == 'e') | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 938 | bool atLeastOneFound = false; | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1466 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1467:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2311:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2314:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1450:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1468:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16: required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet >, Owner > >; TReadIDs = StringSet > >; TGenomeSet = StringSet, Alloc<> > >; TDistr = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1473:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16: required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet >, Owner > >; TReadIDs = StringSet > >; TGenomeSet = StringSet, Alloc<> > >; TDistr = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 636 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here 638 | case SEQAN_INSERT: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 656 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here 658 | case SEQAN_INSERT: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 636 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here 638 | case SEQAN_INSERT: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 656 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here 658 | case SEQAN_INSERT: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 69%] Linking CXX executable ../../../bin/param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Built target param_chooser make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 712 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 740 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 766 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 198 | if (skipWhitespaces(reader) != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 201 | int kickout = 0; | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 373 | if (pm_options.verbose) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 376 | resize(avg,pm_options.totalN,(TFloat)0.0); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 934 | if (value(reader) == 'e') | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 938 | bool atLeastOneFound = false; | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 70%] Linking CXX executable ../../../bin/test_funcs_param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Built target test_funcs_param_chooser make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:127:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:83: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:264:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 264 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:320:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 320 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:365:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 365 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:48: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = True]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1231:40: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:679:20: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Pigeonhole >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:896:43: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Pigeonhole >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Pigeonhole >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24: required from 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = const Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2241:41: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1105:63: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = const Segment >, InfixSegment>; TNeedle2 = Segment >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1297:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TNeedle2 = const Segment >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1654:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TNeedle2 = const Segment >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TNeedle2 = const Segment >, InfixSegment>; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2177:16: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_interface.h:752:24: required from 'void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:948:7: required from 'void seqan::goEnd(Finder&) [with THaystack = ModifiedString >, InfixSegment>, Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1656:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TNeedle2 = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TNeedle2 = ModifiedString >, InfixSegment>, Tag >; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2245:32: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = const seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = const Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = const Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp [ 72%] Linking CXX executable ../../../bin/razers3 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3 -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 72%] Built target razers3 make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 74%] Linking CXX executable ../../../bin/razers3_simulate_reads cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Built target razers3_simulate_reads make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19: required from 'bool seqan::loadReads(FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19: required from 'bool seqan::loadReads(FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19: required from 'bool seqan::loadReads(FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../../../bin/razers3_quality2prob cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Built target razers3_quality2prob make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; TSource = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1242:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = String, AlignedReadStoreElement, void>, long unsigned int>, Alloc<> >; TValue = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; TPos = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_property.h:178:13: required from 'void seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String, AlignedReadStoreElement, void>, long unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:191:23: required from 'GraphCargo& registerRead(ReadGraph&, typename ReadGraph::TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; typename ReadGraph::TId = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59: required from 'void construct(ReadGraph&, const seqan::String > >&, const seqan::FragmentStore&, TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:212:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>& GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>::operator=(const GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph.h:32, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:34: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note: because 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>' has user-provided 'GraphCargo::GraphCargo(const GraphCargo&) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int]' 44 | GraphCargo(GraphCargo const& other) | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27: required from 'void parseContig(const seqan::FragmentStore&, TId, seqan::String&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int; TAnnotatedCandidateColumn = seqan::Pair > >; TScannerType = SimpleColumn]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = Triple; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::Triple; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = Triple; TTargetSpec = Alloc<>; TSource = Triple; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String >; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:197:19: required from 'void parseContig(const seqan::FragmentStore&, TId, seqan::String&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int; TAnnotatedCandidateColumn = seqan::Pair > >; TScannerType = SimpleColumn]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = char; T2 = unsigned int; T3 = long unsigned int; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../../../bin/rep_sep cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Built target rep_sep make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o -MF CMakeFiles/search.dir/search.cpp.o.d -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Db, Alloc > >, Owner > >, Tag >; TValue2 = Db, Alloc > >, Owner > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Db, Alloc > >, Owner > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Db, Alloc > >, Owner > >, Tag >; typename Reference > >::Type = Db, Alloc > >, Owner > >, Tag >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String >; TValue = long unsigned int; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50, inlined from 'typename seqan::Size > > >::Type seqan::resize(StringSet > >&, TSize, Tag) [with TString = String; TSpec = void; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:421:22, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = StringSet, Owner > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 79%] Linking CXX executable ../../../bin/search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/search.dir/search.cpp.o -o ../../../bin/search -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Built target search make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o -MF CMakeFiles/join.dir/join.cpp.o.d -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Db, Alloc > >, Owner > >, void>; TValue2 = Db, Alloc > >, Owner > >, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Db, Alloc > >, Owner > >, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Db, Alloc > >, Owner > >, void>; typename Reference > >::Type = Db, Alloc > >, Owner > >, void>&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String >; TValue = long unsigned int; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50, inlined from 'typename seqan::Size > > >::Type seqan::resize(StringSet > >&, TSize, Tag) [with TString = String; TSpec = void; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:421:22, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = StringSet, Owner > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 80%] Linking CXX executable ../../../bin/join cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Built target join make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -MF CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o.d -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/deque:67, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index > >, IndexEsa<> >; TSource = Index > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index > >, IndexEsa<> >; TSource = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:322:22: required from 'void SEQAN_TEST_findAllExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:552:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index > >, seqan::IndexEsa<> >& seqan::Index > >, seqan::IndexEsa<> >::operator=(const seqan::Index > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13: required from 'void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16: required from 'typename seqan::Suffix::Type seqan::suffix(const StringSet&, const TPosition&) [with TString = String >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25: required from 'seqan::Pair >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator, TQuery&, typename Difference::Type) [with TText = const StringSet > >; TSA = const String >, Alloc<> >; TSpec = SortedList; TQuery = const String >; typename Iterator >::Type = const Pair >*; typename Difference::Type = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23: required from 'seqan::Pair >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet > >; TSA = String >, Alloc<> >; TQuery = String >; typename Iterator >::Type = const Pair >*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >; EsaFindMlr = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49: required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet&, seqan::StringSet&, unsigned int, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37: required from 'int seqan::readBatch(StringSet&, StringSet&, SequenceStream&, unsigned int) [with TId = String >; TIdSpec = Owner<>; TSequence = String >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49: required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet&, seqan::StringSet&, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35: required from 'int seqan::readAll(StringSet&, StringSet&, SequenceStream&) [with TId = String >; TIdSpec = Owner<>; TSequence = String, Alloc<> >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:13: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index > >, IndexEsa<> >; TSource = Index > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > >, IndexEsa<> >; TValue2 = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > >, IndexEsa<> >; typename Reference > >::Type = Index > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > >, IndexEsa<> > >; typename Parameter_::Type>::Type = Index > >, IndexEsa<> >&; typename Haystack::Type = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1928:40: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >; EsaFindMlr = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index > >, seqan::IndexEsa<> >& seqan::Index > >, seqan::IndexEsa<> >::operator=(const seqan::Index > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9: required from 'void clipBarcodes(TSeqs&, const seqan::String&, unsigned int) [with TSeqs = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14: required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9: required from 'void clipBarcodes(TSeqs&, const seqan::String&, unsigned int) [with TSeqs = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14: required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TValue2 = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; typename Reference > >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:418:11: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 3, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 1, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 2, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, Tag >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, Tag >, Tag >, _skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/x86_64-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/deque:63: /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, Tag >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, Tag >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, Tag >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, Tag >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, Tag >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, Tag >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 82%] Linking CXX executable ../../../bin/test_sflex_demultiplex cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Built target test_sflex_demultiplex make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -MF CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o.d -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38: required from 'int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String >; TSequence = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7: required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String >; TSpec = Mean]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7: required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String >; TSpec = Mean]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 83%] Linking CXX executable ../../../bin/test_sflex_trimming cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Built target test_sflex_trimming make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -MF CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o.d -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:51: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of 'unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:224:29: required from 'void SEQAN_TEST_strip_pair_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:245:2: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared 'seqan::Align > >::Align(const seqan::Align > >&)' is deprecated [-Wdeprecated-copy] 297 | TAlign align = ret.i2; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15: required from 'void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String >; typename Reference > >::Type = String >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17: required from 'typename seqan::Source > >::Type& seqan::source(Gaps >&) [with TSequence = String >; typename Source > >::Type = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22: required from 'unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 85%] Linking CXX executable ../../../bin/test_sflex_adapter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Built target test_sflex_adapter make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -MF CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o.d -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22: required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet, seqan::Alloc<> > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22: required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet, seqan::Alloc<> > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [31]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = char [31]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> > >; TValue = char [31]]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16: required from 'void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = char [7]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = char [7]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet > >; TValue = char [7]]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16: required from 'void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [11]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = char [11]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> > >; TValue = char [11]]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ [ 87%] Linking CXX executable ../../../bin/test_sflex_general_processing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Built target test_sflex_general_processing make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -MF CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o.d -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function 'seqan::ArgumentParser initParser()': /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 610 | std::auto_ptr argParseBuilder; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/test_system.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:62, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:71: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of 'unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:411:12: required from 'unsigned int stripPairBatch(seqan::StringSet >&, seqan::StringSet&, seqan::StringSet >&, seqan::StringSet&, AdapterTrimmingStats&, bool) [with TSeq = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1926:27: required from 'void adapterTrimmingStage(AdapterTrimmingParams&, TSeqs&, TIds&, TSeqs&, TIds&, bool) [with TSeqs = seqan::String > > >; TIds = seqan::String > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2726:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared 'seqan::Align >, seqan::Tag >::Align(const seqan::Align >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 297 | TAlign align = ret.i2; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49: required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet&, seqan::StringSet&, unsigned int, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37: required from 'int seqan::readBatch(StringSet&, StringSet&, SequenceStream&, unsigned int) [with TId = String >; TIdSpec = Owner<>; TSequence = String >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49: required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet&, seqan::StringSet&, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35: required from 'int seqan::readAll(StringSet&, StringSet&, SequenceStream&) [with TId = String >; TIdSpec = Owner<>; TSequence = String, Alloc<> >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16: required from 'typename seqan::Suffix::Type seqan::suffix(const StringSet&, const TPosition&) [with TString = String, Alloc<> >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25: required from 'seqan::Pair >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator, TQuery&, typename Difference::Type) [with TText = const StringSet, Alloc<> > >; TSA = const String >, Alloc<> >; TSpec = SortedList; TQuery = const String >; typename Iterator >::Type = const Pair >*; typename Difference::Type = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23: required from 'seqan::Pair >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet, Alloc<> > >; TSA = String >, Alloc<> >; TQuery = String >; typename Iterator >::Type = const Pair >*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >; EsaFindMlr = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22: required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >; TMulti = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24: required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22: required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >; TMulti = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24: required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TValue2 = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; typename Reference > >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 3, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 1, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 2, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: 'snprintf' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: 'snprintf' output between 2 and 5 bytes into a destination of size 4 399 | snprintf(buffer, 4, "%d", x); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 88%] Linking CXX static library libseqan_flexlib.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -P CMakeFiles/seqan_flexlib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexlib.dir/link.txt --verbose=1 /usr/bin/ar qc libseqan_flexlib.a CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o /usr/bin/ranlib libseqan_flexlib.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Built target seqan_flexlib make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 90%] Linking CXX executable ../../../bin/sflexQC cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexQC.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexQC libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 90%] Built target sflexQC make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 91%] Linking CXX executable ../../../bin/sflexAR cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexAR.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexAR libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Built target sflexAR make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 93%] Linking CXX executable ../../../bin/sflexDMulti cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexDMulti.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Built target sflexDMulti make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 95%] Linking CXX executable ../../../bin/sflexFilter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Built target sflexFilter make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -MF CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 96%] Linking CXX executable ../../../bin/seqan_flexbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Built target seqan_flexbar make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:759:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:760:23: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor) [with TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:617:19, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:764:10: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Undirected<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:759:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Undirected<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:760:23: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor) [with TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:441:19, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:764:10: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 98%] Linking CXX executable ../../../bin/sgip cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Built target sgip make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o -MF CMakeFiles/variant_comp.dir/variant_comp.cpp.o.d -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:238:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 238 | struct LessGPosSize : public ::std::binary_function < TIndel, TIndel, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:256:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | struct LessGPos : public ::std::binary_function < TVariant, TVariant, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 278 | if(options.genotypeAware && predIndel.genotype != refIndel.genotype) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 281 | int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance); | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 477 | for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it) | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 479 | for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15: required from 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, TValue, String&) [with TValue = int; TCargo = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:582:17: required from 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&) [with TIndelSet = StringSet; TGenome = StringSet, Alloc<> > >; TGenomeIDs = String > >; TOptions = IndelCompareOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:834:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1949 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1961 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1982 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:39: required from 'int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet; TSnpSet = seqan::StringSet; TGenomeMap = std::map >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [100%] Linking CXX executable ../../../bin/variant_comp cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target variant_comp make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Ct5e0D + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seqan-1.4.2 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build/Release make: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/dfi/CMakeFiles/dfi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Built target dfi /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/compute_gain.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Built target compute_gain /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Built target fiona /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Built target fiona_illumina /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/mason/CMakeFiles/mason.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Built target mason /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 9%] Built target micro_razers /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target pair_align /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Built target rabema_prepare_sam /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Built target rabema_build_gold_standard /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_evaluate /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_do_search /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Built target razers /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 20%] Built target razers2 /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Built target sak /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Built target sam2matrix /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target samcat /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target seqan_tcoffee /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Built target seqcons /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target snp_store /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target splazers /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Built target stellar /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target tree_recon /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target seqan_extras /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target alf /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target breakpoint_calculator /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Built target bisar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Built target casbar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target four2three /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_bam_coverage /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_fastq_stats /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Built target gustaf /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Built target insegt /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_sim /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_genome /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_methylation /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Built target mason_frag_sequencing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Built target mason_variator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Built target mason_materializer /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Built target mason_simulator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Built target mason_splicing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target mason_tests /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target roi_plot_thumbnails /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Built target bam2roi /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Built target roi_feature_projection /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Built target param_chooser /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Built target test_funcs_param_chooser /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 72%] Built target razers3 /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Built target razers3_simulate_reads /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Built target razers3_quality2prob /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Built target rep_sep /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Built target search /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Built target join /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Built target test_sflex_demultiplex /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Built target test_sflex_trimming /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Built target test_sflex_adapter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Built target test_sflex_general_processing /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Built target seqan_flexlib /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 90%] Built target sflexQC /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Built target sflexAR /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Built target sflexDMulti /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Built target sflexFilter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Built target seqan_flexbar /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Built target sgip /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target variant_comp make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/dfi -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/dfi/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/dfi/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/dfi/example/fasta1.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/dfi/example/fasta2.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/fiona -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/compute_gain -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/fiona/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/fiona/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/fiona/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/micro_razers -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/micro_razers/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/micro_razers/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/micro_razers/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/micro_razers/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/micro_razers/example/reads.fa.result -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/pair_align -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/pair_align/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/pair_align/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_prepare_sam -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_build_gold_standard -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_evaluate -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_prepare_sam -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_build_gold_standard -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_evaluate -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/rabema/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/rabema/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/razers -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers/example/reads2.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/razers2 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers2/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers2/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers2/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers2/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers2/example/reads2.fa gmake[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc gmake[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 /usr/bin/gmake -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all gmake[3]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target sak /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Generating README.sak.txt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=txt > README.sak.txt [100%] Generating sak.1 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=man > sak.1 gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target sak_doc gmake[3]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start 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Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/seqan_flexbar/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/sgip -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/iso_m2D_m196.A01 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.A00 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.A01 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.B00 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.B01 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/latin-4 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/lattice-4 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip/example/sts-7 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/variant_comp -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/variant_comp/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/variant_comp/README make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' + mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/include/seqan + cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/include/seqan + cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/include/seqan + mkdir -p seqandoc + cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan/variant_comp seqandoc + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan + rm -f 'seqandoc/*.txt' + mv /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/searchjoin + find /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin -type f -name '*.h' -exec chmod 0755 '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.4.2-51.fc38 --unique-debug-suffix -1.4.2-51.fc38.x86_64 --unique-debug-src-base seqan-1.4.2-51.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-1.4.2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/alf extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/bam2roi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/bisar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/breakpoint_calculator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/casbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/compute_gain extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/dfi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/fiona extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/four2three extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/fx_bam_coverage extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/gustaf extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/insegt extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason_frag_sequencing extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason_genome extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason_materializer extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason_simulator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/mason_variator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/micro_razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/pair_align extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/param_chooser extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_build_gold_standard extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_evaluate extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rabema_prepare_sam extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/razers2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/razers3 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/rep_sep extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/roi_feature_projection extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/roi_plot_thumbnails extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/sak extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/sam2matrix extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/samcat extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/searchjoin extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/seqan_flexbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/seqan_tcoffee extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/seqcons extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/sgip extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/snp_store extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/splazers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/stellar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/tree_recon extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/bin/variant_comp original debug info size: 564176kB, size after compression: 491472kB /usr/bin/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match. 24419 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: seqan-1.4.2-51.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.MCb1eG + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.HPy2cR + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(gnulib) seqan = 1.4.2-51.fc38 seqan(x86-64) = 1.4.2-51.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.25)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.35)(64bit) libc.so.6(GLIBC_2.36)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libemon.so.1.3.1()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH) Processing files: seqan-devel-1.4.2-51.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GP9LBZ + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan-devel + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan-devel + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan-devel + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5VD8nj + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-devel + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-devel + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-devel + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-devel + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-devel + RPM_EC=0 ++ jobs -p + exit 0 Provides: seqan-devel = 1.4.2-51.fc38 seqan-devel(x86-64) = 1.4.2-51.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-doc-1.4.2-51.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.fN2vrK + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan-doc + cp -pr seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/doc/seqan-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Tjgq8z + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-doc + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-doc + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-doc + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64/usr/share/licenses/seqan-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: seqan-doc = 1.4.2-51.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debugsource-1.4.2-51.fc38.x86_64 Provides: seqan-debugsource = 1.4.2-51.fc38 seqan-debugsource(x86-64) = 1.4.2-51.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debuginfo-1.4.2-51.fc38.x86_64 Provides: debuginfo(build-id) = 01cc8a3c54a3a1c1bdf8a97f7dc3649751adbcad debuginfo(build-id) = 06fd225349f00c23d412aaa5094525cf350af835 debuginfo(build-id) = 09684224b8e2a5a03019eb8b4a3c10313d72993f debuginfo(build-id) = 1110132741d36590f8843942a8fe38bf5eb2bf44 debuginfo(build-id) = 1946dda4091476252b3004ef19c325f2b04efb1b debuginfo(build-id) = 1a5c33427e48702669e3bb8717999fcd835cde82 debuginfo(build-id) = 1d19320937575a5c1e842b8ebf47a23ad2b565a6 debuginfo(build-id) = 26ed81b27f096c55b24759f0427521395aae6b7c debuginfo(build-id) = 2ab253f5eb0bba7d7554f2c445a0018e99a98d86 debuginfo(build-id) = 2f7035a8f360bcb0bb15f956505e689f39fc7e19 debuginfo(build-id) = 36d490a2f2571a871ae33cd4b7d7ecc0bfc4c3ef debuginfo(build-id) = 376648919e8040d3fd7059b4367e7ef221128f53 debuginfo(build-id) = 3931a683b063c7c122f0d1d390b02cc45e3da3ce debuginfo(build-id) = 53a39e43c74d7a3594d5afb2453d77fcbcdf3c66 debuginfo(build-id) = 553bd244881c5254cec309594bb6e27bbeb01007 debuginfo(build-id) = 5f6baa471d173020a7132d59d7ee7b72b1ee06dd debuginfo(build-id) = 6388c5a32e0177e579b8bc59f1b27f34898e93a2 debuginfo(build-id) = 666d419ad4877a9baee0bb7ef1995903acc1110d debuginfo(build-id) = 6800d2eb7805aa9579ecac61ac2f0708500e7519 debuginfo(build-id) = 72e16dbcf1c6446c8e4d83dc04fef8421790e82c debuginfo(build-id) = 7a2ffeaa6d2a685b6a3917b7d6a923a474d24d5a debuginfo(build-id) = 8d3b6ceb3b101604d00e1162231fa2190fa586a4 debuginfo(build-id) = 967ce15f3a5571b5cf66cc5a80febec8c0b2b082 debuginfo(build-id) = 9b3e9987a6a208a48f6056a0672a45e37ee821d6 debuginfo(build-id) = 9d31edc5420fa37cc16f8f0a5249834a3a1e8b76 debuginfo(build-id) = a460e3bd8906221d62f47c75c966d884082875e0 debuginfo(build-id) = a520c04440be157dfe8527d7c2c8fd23e356b48f debuginfo(build-id) = a584738bf974c1b8777f986c1b2a17da763755b3 debuginfo(build-id) = a76abaa42621f1c4483252eb0d0a83fc0c20c31d debuginfo(build-id) = a93e441921a753a5fd4444967e7996b829a1a1b7 debuginfo(build-id) = b326f0cddf831f56503da2afc0544a14f5fb28f6 debuginfo(build-id) = b6c72385b2bee62a5bc35e7de58f52b936a7d041 debuginfo(build-id) = b8edfcd0aba4cc8ce8cfbae95a83edea0a3dc6b9 debuginfo(build-id) = b9179243f64e4dc2bc900bdc623da7aee608878c debuginfo(build-id) = bf3edf883c15e85b99167b39e5cb781f039305b2 debuginfo(build-id) = c42a4e3d05dc57d31847bf1596ec255a50e2eb66 debuginfo(build-id) = c5e58ce52e01999fa7888e8b9df84c86c8d6b8af debuginfo(build-id) = ca2e307a369bd9729306c378da281b1e3b789586 debuginfo(build-id) = cefddace5917d71f92e7e3d7724ee44a1e6e20c5 debuginfo(build-id) = ddd5aa1652056f51bbb887cf4a5cde036b669548 debuginfo(build-id) = e3b5a53e52fa3be3309a46e9da659c0cbf58051b debuginfo(build-id) = e665c425c04a1635686cebee2583a249621b86b0 debuginfo(build-id) = fa670b557d90a7a2776469fa4aefd42608bc8960 seqan-debuginfo = 1.4.2-51.fc38 seqan-debuginfo(x86-64) = 1.4.2-51.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seqan-debugsource(x86-64) = 1.4.2-51.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 Wrote: /builddir/build/RPMS/seqan-1.4.2-51.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-51.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-51.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-51.fc38.noarch.rpm Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-51.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Nof1zc + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-51.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.9fCbR7 + umask 022 + cd /builddir/build/BUILD + rm -rf seqan-1.4.2 seqan-1.4.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild seqan-1.4.2-51.fc38.src.rpm Finish: build phase for seqan-1.4.2-51.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1674330940.908942/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/seqan-1.4.2-51.fc38.src.rpm) Config(child) 31 minutes 32 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool